Pairwise Alignments

Query, 412 a.a., General secretion pathway protein F / Type II secretory pathway, component PulF from Variovorax sp. SCN45

Subject, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

 Score =  189 bits (481), Expect = 1e-52
 Identities = 123/406 (30%), Positives = 205/406 (50%), Gaps = 16/406 (3%)

Query: 4   YSFEAIDASGQSREGVLEADTARSARSLLRAQALIPLSVKPVGSDHVNGTGQRSGLGRWL 63
           Y ++ I+++G+   G + A +    R  L+ Q             H+     + G    L
Sbjct: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQ-------------HIQIKKLKKGSVSLL 58

Query: 64  GGGKRVFNSTGLAVWTRQLAGLVSSGLPLERALTALTDEAESEPQRNLVASLRAEVNAGS 123
                   S  + + TRQLA ++++G+P+ +AL  + D       ++++A +   V AG+
Sbjct: 59  ARLTHRVKSKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGT 118

Query: 124 PFARALSAHSREFSPIYTAVIGAGEQSGNLGLVLDRLADDLEERQALQQKLIGAALYPAI 183
           P ++A+   S  F  +Y  ++  GE SGNL  V +RLA   E+ + L+ K+I A +YP++
Sbjct: 119 PLSKAMRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSM 178

Query: 184 VTLVAIVIVIFLVSYVVPQVAQVFAGTKRSLPFLTTVMLSLSAGVRNYGWWMLGAVVLGA 243
           V LVA+ +   +++ V+P+   +F G    LP+ T  +L LS  V+ Y  W   A+    
Sbjct: 179 VVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAI 238

Query: 244 IGARLALAQEAF--RLKFDAAWLKLPLVGKLARGYNAARFASTLAMLATAGVPILRALQA 301
            G + AL + +F  RLK     LK P++G +    + A+F+ TLA    AG+PIL +L+ 
Sbjct: 239 FGLK-ALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKT 297

Query: 302 ASETLGNRAMRADALDALVLVREGAPLASALAQKKRFPGLVSMFARLGEQTGTLPLMLQR 361
            ++T GN        +       G P+  A+   + FP +V     +GE++G L  ML +
Sbjct: 298 TAKTSGNVHFETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNK 357

Query: 362 AANQLGAEVQRRAMHLATILEPLLIVAMGGVVMLIVLAVMLPIIQL 407
            A     EV     +L  ILEPL+IV +G VV  +V+A+ LPI  L
Sbjct: 358 VATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNL 403