Pairwise Alignments

Query, 412 a.a., General secretion pathway protein F / Type II secretory pathway, component PulF from Variovorax sp. SCN45

Subject, 407 a.a., type II secretion system F family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  149 bits (376), Expect = 1e-40
 Identities = 97/406 (23%), Positives = 193/406 (47%), Gaps = 10/406 (2%)

Query: 1   MPAYSFEAIDASGQSREGVLEADTARSARSLLRAQALIPLSVKPVGSDHVNGTGQRSGLG 60
           M  + ++  +A G    G++EA T   A  +L  + ++P S+         G  ++S   
Sbjct: 1   MATFYYQGRNADGSKASGLVEAATEELAAEMLLNKGIVPTSI-------AQGAAEKSAFD 53

Query: 61  -RWLGGGKRVFNSTGLAVWTRQLAGLVSSGLPLERALTALTDEAESEPQRNLVASLRAEV 119
             W            L ++ RQ+  L  +G+PL R++  L     ++  +  + S+  E+
Sbjct: 54  FNWKALLTPSVPLEVLVIFCRQMFSLTKAGVPLLRSMRGLAQNCHNKQLKAALDSVCNEL 113

Query: 120 NAGSPFARALSAHSREFSPIYTAVIGAGEQSGNLGLVLDRLADDLEERQALQQKLIGAAL 179
             G   + ++  H   FSP++ ++I  GE +G L   L +LA   E+    ++++  A  
Sbjct: 114 TNGRNLSASMQLHPAIFSPLFVSMIQVGENTGRLDQALLQLAGYYEQEVETRKRIKTAMR 173

Query: 180 YPAIVTLVAIVIVIFLVSYVVPQVAQVFAGTKRSLPFLTTVMLSLSAGVRNYGWWMLGAV 239
           YP  V    ++ +  L   V+PQ   +F+     LP  T ++++ S    NY W +L  +
Sbjct: 174 YPTFVITFVLLAMFILNVKVIPQFTSMFSRFGVDLPLPTRILITTSDFFVNY-WGLLLGI 232

Query: 240 VLGAIGARLALAQEAF-RLKFDAAWLKLPLVGKLARGYNAARFASTLAMLATAGVPILRA 298
           ++G + A  A       R+++D   L++P+VG +      +RFA T +++ +AGVP+ ++
Sbjct: 233 IVGLLFAFRAWVNTTNGRIRWDHLRLRMPIVGDIVNRAQLSRFARTFSLMLSAGVPLNQS 292

Query: 299 LQAASETLGNRAMRADALDALVLVREGAPLASALAQKKRFPGLVSMFARLGEQTGTLPLM 358
           L  ++E + N+ +    L+    +  G  +++       F  LV     +GE+TG +  +
Sbjct: 293 LALSAEAIDNKFLEQRILEMKSQIESGVAVSATAINANIFTPLVIQMMSVGEETGRIDEL 352

Query: 359 LQRAANQLGAEVQRRAMHLATILEPLLIVAMGGVVMLIVLAVMLPI 404
           L   ++    EV      L   +EP+L+V +  +V+++ L + LP+
Sbjct: 353 LLEVSDFYDREVDYDLKTLTARIEPILLVFVAAMVLVLALGIFLPM 398