Pairwise Alignments

Query, 1038 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  393 bits (1009), Expect = e-113
 Identities = 291/1030 (28%), Positives = 511/1030 (49%), Gaps = 49/1030 (4%)

Query: 1    MNVSAWSIRNPIPAVMLFVLLTFGGLLSFNAMKVQNFPDIDLPTVTVSASLPGAAPSQLE 60
            M +S  S++ P+ A++L +LL   G++SF  + V+  PDI+ P V+VS    GA+ + +E
Sbjct: 1    MWLSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIE 60

Query: 61   TDVARKLENSIATVQGLKHITTKVQDGAATLIVEFRLEKPVQEAVDDVRSAVQRVRADLP 120
            + +   LE+ +A + G+  IT+  ++G + + V F L   +   V D+R AV R +  LP
Sbjct: 61   SQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLP 120

Query: 121  ADVRDPVVTKLDLAGQPVLAFTIASSQMDNEALSWYVDNDVTKRLLALPGVGAVNRVGGA 180
             +  DP V K + +GQ  +   ++SS+MD   L+ Y++  +  R   + GV +V+  GG 
Sbjct: 121  EEADDPQVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGL 180

Query: 181  TRQVHVDLDPVKLQALGASAGDISRQLRQVQTESAGGRFDLGGSEQPVRTMATVKSADQL 240
             + ++V + P  +   G +  DIS  L +   ES GG+     +   VRT    +SA+  
Sbjct: 181  YKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAEDF 240

Query: 241  ADMQIV-LTDGRRIRLDQVARISDTIAEPRAAALLNGKPVVGFEVARSRGASEVEVGHAV 299
              + +   +DG  I L  VA +        +    +G   V   +     A+ +EV   V
Sbjct: 241  EYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRV 300

Query: 300  QKALADMRAQRPD-IELTEAFNFVDPVEEEYNGSLHLLYEGAILAVVVVWLFLRDWRATF 358
             + +  ++   P    L   ++    +E   +     L+    L ++V+++F+   RAT 
Sbjct: 301  HEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRATL 360

Query: 359  VSAVALPMSVIPAFIGMHLLGFSVNVISLLALSLVVGILVDDAIVEVENIVRHLRMGKTP 418
            + AV +P+S+I AF+  +  GFS+N+I+L+AL L +G++VDDAIV VENI  H+  G+ P
Sbjct: 361  IPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGEKP 420

Query: 419  YQAAMEAADEIGLAVIATTFTLIAVFLPTAFMSGIAGKFFKQFGWTAALAVFASLVVARV 478
              AA +   E+G AVIATT  L+ VFLP +FM G+ G  F +F    A+AV  S ++A  
Sbjct: 421  LLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIALT 480

Query: 479  LTPMMAAYMLKPVVT------------AETEPGWLRWYMRAVEWSTHNRFKTMVLATLFF 526
            LTP++ + +LK  V             A  E G+ +   RA+ W    R+   V+     
Sbjct: 481  LTPVLGSKLLKANVKPGRFNQLIDRLFARLESGYRQVVSRAIRW----RWAAPVVIAACI 536

Query: 527  FGSLAMIPLLKTGFIPPDDNSQTQVYLSLAPGSTLAQTTAAAEETRRRVMQI---PHVK- 582
             GS  ++ L+     P +D      ++  A  ++  +  A  +   +R+M +     +K 
Sbjct: 537  GGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRLMPLLGQGFLKS 596

Query: 583  -SVYTTVAGGSAGGDPFASFGTPETRKATLTIKLDPRGDRP-RKQVIENQIRSALETLPG 640
             S+ +   GG+AG            +   + + L+   DR    Q   +Q+R AL  +P 
Sbjct: 597  FSIQSPAFGGNAG-----------DQTGFVIMILEDWNDRTVTAQEALSQVRKALAGIPD 645

Query: 641  VRSTVGL----GGSGEKYILALTGEDPVALASAASAVEKDLRTIPGLGNITSTASLVRPE 696
            VR    +    GGS E     L G D   L + A  +E++    P +       S   PE
Sbjct: 646  VRVFPFMPGFRGGSNEPVQFVLGGSDYSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPE 705

Query: 697  IAVRPDFARAADLGVTSSAIAETLRVATLGDYDQSLAKLNLAQRQVPIVVKLEDSARQDI 756
            + V  D  RAA+LG++  +I++TL V   G    +  +      +  + ++ ++++  + 
Sbjct: 706  LVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERG---EEYDVYLRGDENSFNNA 762

Query: 757  DLLGRLSVPGTRGP-VMLNQVASLSMEGGPAVIDRYDRSRNVNFEIEL-SGVGLGDAKAA 814
              L ++ +    G  V L+ V  +        +  Y++ ++V     L +G  LG A   
Sbjct: 763  ADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDF 822

Query: 815  V-QKLPSIQKLPPGVRIAEVGDAEVMTELFASFGLAMLTGVLCIYIVLVLLFKDFLHPVT 873
            + QK   I  LP  + ++  G+++   E  +S  +     +L  Y+VL   F+ F++P+ 
Sbjct: 823  LDQKAQEI--LPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLV 880

Query: 874  ILCALPLALGGAFVGLLIGQKALSMPSLIGLIMLMGIATKNSILLVEYAIVARRDHGMSR 933
            ++  +P+ + G F+GL +  + +++ S IG+IML+G+ TKN IL+VE+A    RD G+  
Sbjct: 881  VMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFA-NQLRDRGVEF 939

Query: 934  WDALRDACHKRARPIIMTTLAMGAGMLPIAVGFGSADSSFRSPMAMAVIGGLITSTVLSL 993
              A+ DA  +R RPI+MT     AG +P+ V  G+   S R  +   +  G+  +T+++L
Sbjct: 940  EKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYES-RIAVGTVIFFGMGFATLVTL 998

Query: 994  LVVPAVFTYV 1003
            LV+PA++  +
Sbjct: 999  LVIPAMYRLI 1008