Pairwise Alignments

Query, 1038 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1103 a.a., transport transmembrane protein from Sinorhizobium meliloti 1021

 Score =  816 bits (2107), Expect = 0.0
 Identities = 456/1045 (43%), Positives = 663/1045 (63%), Gaps = 50/1045 (4%)

Query: 1    MNVSAWSIRNPIPAVMLFVLLTFGGLLSFNAMKVQNFPDIDLPTVTVSASLPGAAPSQLE 60
            MN SAWSIRNP+  ++ F +L   G  SFN++ +  FP+ID+P V+++ +  GAAP++LE
Sbjct: 1    MNFSAWSIRNPVAPILAFFVLVVLGWQSFNSLPITRFPNIDVPIVSIAVTQSGAAPAELE 60

Query: 61   TDVARKLENSIATVQGLKHITTKVQDGAATLIVEFRLEKPVQEAVDDVRSAVQRVRADLP 120
            T V +++E+++A V G+ HI + + DG +T  V FR+E P  +AV DV+ A+ R+R+DLP
Sbjct: 61   TQVTKEIEDAVAGVSGVDHIESTITDGISTTAVIFRMEVPTTQAVQDVKDAIDRIRSDLP 120

Query: 121  ADVRDPVVTKLDLAGQPVLAFTIASSQMDNEALSWYVDNDVTKRLLALPGVGAVNRVGGA 180
              + +P+V+K+D+ GQ +  F+++S  M  E LSW+VD+ + + +    G+G V+R GG+
Sbjct: 121  TSIEEPIVSKVDVEGQAIQTFSVSSPGMTLEELSWFVDDTIKRAIQGQTGIGRVDRYGGS 180

Query: 181  TRQVHVDLDPVKLQALGASAGDISRQLRQVQTESAGGRFDLGGSEQPVRTMATVKSADQL 240
             R+V V+LD  +L + G SA D++ QLR++  +   GR  +GGSEQ +RT+   +    L
Sbjct: 181  DREVRVELDEDRLNSFGISAADVNAQLRRMNMDLGSGRGQVGGSEQAIRTLGDTRDVTAL 240

Query: 241  ADMQIVLTDGRRIRLDQVARISDTIAEPRAAALLNGKPVVGFEVARSRGASEVEVGHAVQ 300
            A   I L +GR +RL ++ ++ DT  EP++ +  NG+P V F V R++GASEV V   V 
Sbjct: 241  AGTMISLPNGRFVRLSELGKVIDTYEEPKSFSRFNGQPGVTFAVFRAKGASEVSVAETVG 300

Query: 301  KALADMRAQRPDIELTEAFNFVDPVEEEYNGSLHLLYEGAILAVVVVWLFLRDWRATFVS 360
            K L ++RA+ PD+ +    + V      Y  ++H L EGA+LAV+VV LFLR+WRAT +S
Sbjct: 301  KTLDEIRAKHPDVSIEMVDDSVYFTYGNYEAAIHTLIEGAVLAVIVVMLFLRNWRATLIS 360

Query: 361  AVALPMSVIPAFIGMHLLGFSVNVISLLALSLVVGILVDDAIVEVENIVRHLRMGKTPYQ 420
            AVALP+S IP F  M LLGFS+N++S LA++L  GILVDDAIVE+ENI RH+RMGK+PY+
Sbjct: 361  AVALPLSAIPTFWVMELLGFSLNLVSFLAMTLATGILVDDAIVEIENIERHIRMGKSPYR 420

Query: 421  AAMEAADEIGLAVIATTFTLIAVFLPTAFMSGIAGKFFKQFGWTAALAVFASLVVARVLT 480
            AA+EAADEIGLAVIATTFT+IAVF+P +FM GI G++F QFG T A++VF SL+VAR++T
Sbjct: 421  AAIEAADEIGLAVIATTFTIIAVFVPVSFMPGIPGQYFIQFGLTVAVSVFFSLLVARLIT 480

Query: 481  PMMAAYMLKPVVTA---ETEPGWLRWYMRAVEWST---HNRFKTMVLATLFFFGS-LAMI 533
            P+MAAY++KP   +   + E   +R Y R V ++T   + R+ T++ A L   GS +A++
Sbjct: 481  PVMAAYLMKPSDVSGHHDDEGFMMRQYTRLVRFTTKRWYTRYSTLLAAILVSVGSVVALL 540

Query: 534  PLLKTGFIPPDDNSQTQVYLSLAPGSTLAQTTAAAEETRRRVMQIPHVKSVYTTVAGGSA 593
              +   F+PP+D+S+  + + L P + LA T     E   RV  I  V++V+  + G S 
Sbjct: 541  VFVPGSFLPPEDSSRVSLSIELPPDAMLADTDRTTTEIYNRVKDIDGVENVF-VLGGASP 599

Query: 594  GGDPFASFGTPETRKATLTI-----------------------------KLDPRGDRPRK 624
             GD        E R+A +T+                             KL P G    +
Sbjct: 600  KGD-------LELRRAAVTVLLEKLDHSLINKVVNDVIGRTPLIGQYLPKLPPAGRIKPQ 652

Query: 625  QVIENQIRSALETLPGVRSTVGLGGSGEKYI-LALTGEDPVALASAASAVEKDLRTIPGL 683
              IE +I + L ++P VR T  L   GE+ +   L   +   L  A + +E DLR  P L
Sbjct: 653  SEIEKEIFARLRSIPDVRVT-KLNDRGERDLSFNLLSSNEADLDKAVATLEADLRRDPLL 711

Query: 684  GNITSTASLVRPEIAVRPDFARAADLGVTSSAIAETLRVATLGDYDQSLAKLNLAQRQVP 743
             N++   +L RPE+ +RP   + + LG+T++ I+E +R+AT+GD D  L K+ L  R +P
Sbjct: 712  ANVSPEGALPRPELQIRPRDEQMSRLGITTAQISEVIRIATIGDIDAQLTKIALDGRLIP 771

Query: 744  IVVKLEDSARQDIDLLGRLSVPGTRG-PVMLNQVASLSMEGGPAVIDRYDRSRNVNFEIE 802
            I V+L+   R D+  +  L V    G  V L+ VA ++   GP+ I RYDR R V    +
Sbjct: 772  IRVQLDRDFRTDLAAIRNLKVQTASGATVPLSSVADINYAEGPSSIKRYDRYRVVKLGAD 831

Query: 803  L-SGVGLGDAKAAVQKLPSIQKLPPGVRIAEVGDAEVMTELFASFGLAMLTGVLCIYIVL 861
            L +GV L  A A  +++ +   LP  V+  E GDAEV  E+  SFG AML G++ + +VL
Sbjct: 832  LPAGVALDTASARFREIAADADLPETVQFLESGDAEVQAEMQESFGNAMLLGLMMVLVVL 891

Query: 862  VLLFKDFLHPVTILCALPLALGGAFVGLLIGQKALSMPSLIGLIMLMGIATKNSILLVEY 921
            +LLFKD + P TIL +LPLA+GG    L++ Q ALSMP LIG++MLMGI TKN+ILLV++
Sbjct: 892  ILLFKDVIQPFTILFSLPLAIGGVAAALILTQNALSMPVLIGILMLMGIVTKNAILLVDF 951

Query: 922  AIVARRDHGMSRWDALRDACHKRARPIIMTTLAMGAGMLPIAVGFGSADSSFRSPMAMAV 981
             I     HGM R  A+ +A  KRARPI+MT++AM AGMLP A+G G    SFR+PMA+AV
Sbjct: 952  GI-EMMHHGMDRTLAMIEAGRKRARPIVMTSIAMSAGMLPSALGVGEG-GSFRAPMAIAV 1009

Query: 982  IGGLITSTVLSLLVVPAVFTYVDDI 1006
            IGG+I STVLSL+VVP+ F  +DD+
Sbjct: 1010 IGGIIVSTVLSLVVVPSFFLIMDDL 1034