Pairwise Alignments

Query, 1038 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1041 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  478 bits (1229), Expect = e-138
 Identities = 316/1049 (30%), Positives = 535/1049 (51%), Gaps = 54/1049 (5%)

Query: 1    MNVSAWSIRNPIPAVMLFVLLTFGGLLSFNAMKVQNFPDIDLPTVTVSASLPGAAPSQLE 60
            MNV+ + IR P+   ++ + L F G++ +  + V + P++D PT+ V A LPGA P  + 
Sbjct: 1    MNVTEFFIRRPVTTTLVMLGLLFFGVMGYRQLPVSDLPNVDFPTIQVRAQLPGADPETMA 60

Query: 61   TDVARKLENSIATVQGLKHITTKVQDGAATLIVEFRLEKPVQEAVDDVRSAVQRVRADLP 120
            + VA  LE   AT+ G+  +++    G   + ++F L + +  A  DV++A+   +  LP
Sbjct: 61   SSVAAPLERQFATIAGIDSMSSTNTQGNTRITIQFNLSRDIDAAAQDVQAAISTAQRKLP 120

Query: 121  ADVRDPV-VTKLDLAGQPVLAFTIASSQMDNEALSWYVDNDVTKRLLALPGVGAVNRVGG 179
            +D+  P    K++ A QP+L   + S  +    ++ Y +  + + +  + GV  VN  G 
Sbjct: 121  SDLTTPPSYQKVNPADQPILFLALTSPTLPLSKVNEYAETRIGQTISMVSGVAQVNVYGA 180

Query: 180  ATRQVHVDLDPVKLQALGASAGDISRQLRQVQTESAGGRFDLGGSEQPVRTMATVKSADQ 239
                V V +DP +L+ALG    ++S  + +  +    G        Q   T + +K++ Q
Sbjct: 181  KKYAVRVQVDPRRLKALGLGIDEVSAAVDKANSNLPTGTL------QGEHTASIIKASGQ 234

Query: 240  LAD------MQIVLTDGRRIRLDQVARISDTIAEPRAAALLNGKPVVGFEVARSRGASEV 293
            L D      + +   +G  +RL+++ R+ D++ + R     N +  +   V R  G + V
Sbjct: 235  LYDAAAYRPVVVAYRNGAPVRLEELGRVVDSVEQDRILNWFNDERGIVLAVQRQPGTNTV 294

Query: 294  EVGHAVQKALADMRAQRPD-IELTEAFNFVDPVEEEYNGSLHLLYEGAILAVVVVWLFLR 352
            EV  ++++ L +   Q P  ++L   F+  + ++         L     L V+V++LFLR
Sbjct: 295  EVVESIKRLLPEFERQLPAAVKLNILFDRSESIKASVAEVKFTLVLTVCLVVLVIFLFLR 354

Query: 353  DWRATFVSAVALPMSVIPAFIGMHLLGFSVNVISLLALSLVVGILVDDAIVEVENIVRHL 412
               AT + ++ALPMSV+  F  MH++GFS++ +SL+AL+L VG +VDDAIV +ENIVRH+
Sbjct: 355  SLSATVIPSLALPMSVVVTFAAMHMMGFSLDNLSLMALTLAVGFVVDDAIVMLENIVRHM 414

Query: 413  RMGKTPYQAAMEAADEIGLAVIATTFTLIAVFLPTAFMSGIAGKFFKQFGWTAALAVFAS 472
             MGKTP +AA++ A EIG  +I+ T +L AVF+P  FM GI G+ F +F     +A+  S
Sbjct: 415  EMGKTPLRAALDGAREIGFTIISMTVSLAAVFIPVLFMGGIVGRLFHEFAVVITVAILLS 474

Query: 473  LVVARVLTPMMAAYMLKPVV----------TAETEPGWL-RWYMRAVEWSTHNRFKTMVL 521
              V+  LTPM+ A  LKP V            ET    L R Y R++ ++  +   T  L
Sbjct: 475  GFVSLSLTPMLCALFLKPHVGQRRHGRVYNALETFFETLHRGYERSLRFTMRHHRMTFGL 534

Query: 522  ATLFFFGSLAMIPLLKTGFIPPDDNSQTQVYLSLAPGSTLAQTTAAAEETRRRVMQIPHV 581
            + +    ++ +   +  GF+P +D  Q   +       +  Q     +     +   P V
Sbjct: 535  SMVVLGVTVWLFAAMPKGFLPSEDTGQISGFTEADQSVSFGQMVKLQKTLHPIIAADPGV 594

Query: 582  KSVYTTVAGG--SAGGDPFASFGTPETRKATLTIKLDPRGDRPRK-QVIENQIRSALETL 638
             S  +TV  G  + GG+    F           I+L    +R      I N++R+ L   
Sbjct: 595  DSFSSTVGAGGPNVGGNSGRFF-----------IRLKDFDERDEHVDTIINRLRAKLSGF 643

Query: 639  PGVR------STVGLGGSGEK--YILALTGEDPVALASAASAVEKDLRTIPGLGNITSTA 690
            PG+        ++ +GG   K  Y   L G D   L  A + +E  LR +P L ++TS  
Sbjct: 644  PGINVFLVNPPSINVGGRASKSLYQYTLQGPDTAELYKAGTELEAALRELPQLRDVTSDL 703

Query: 691  SLVRPEIAVRPDFARAADLGVTSSAIAETLRVATLGDYDQSLAKLNLAQRQVPIVVKLED 750
             +  PE+ V  D  +AA LG++   + + L+ A      + ++ +        ++++L  
Sbjct: 704  QIRNPEVRVDIDRDKAAALGLSVHQVEDALQSAY---GTRQVSTILAPDNDYQVILELLP 760

Query: 751  SARQDIDLLGRLSVPGTRGP-VMLNQVASLSMEGGPAVIDRYDRSRNVNFEIEL-SGVGL 808
              ++D   +  L+V    G  V L+ +A+L    GP  ++   +  +V     L  GV L
Sbjct: 761  EYQRDASSMSLLNVRSASGRLVPLDTIATLRPSVGPLAVNHSGQFPSVTLSFNLRPGVSL 820

Query: 809  GDAKAAVQKLPSIQKLPPGVRIAEVGDAEVMTELFASFGLAMLTGVLCIYIVLVLLFKDF 868
             +A  AV+ +   Q LPP       G A+          + +   V+ IYIVL +L++ F
Sbjct: 821  SEAVQAVEGIAG-QYLPPTATGTFQGTAQAFQSSMQGMAMLLFMAVVVIYIVLGVLYESF 879

Query: 869  LHPVTILCALPLALGGAFVGLLIGQKALSMPSLIGLIMLMGIATKNSILLVEYAIVARRD 928
            +HP+TIL  LP A  GA V L I    L++ + +G+IML+GI  KN+I+++++A+ A R 
Sbjct: 880  IHPLTILSGLPSAGLGALVTLFIFGIDLNLYAFVGIIMLIGIVKKNAIMMIDFAVEAERK 939

Query: 929  HGMSRWDALRDACHKRARPIIMTTLAMGAGMLPIAVGFGSADSSFRSPMAMAVIGGLITS 988
            +G S ++A+   C  R RPI+MTT+A   G LPIAVG+G   +  R P+ +AV+GGL+ S
Sbjct: 940  NGASPYEAILQGCLIRFRPIMMTTMAALMGTLPIAVGWGPG-AEARQPLGLAVVGGLLVS 998

Query: 989  TVLSLLVVPAVFTYVDDIEHWIRRTVRKL 1017
             +L+L + P  +TY+D +   I+R + ++
Sbjct: 999  QLLTLYITPVYYTYLDALSRRIKRRMGRV 1027