Pairwise Alignments

Query, 378 a.a., Secretion protein HlyD precursor from Variovorax sp. SCN45

Subject, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  108 bits (271), Expect = 2e-28
 Identities = 104/368 (28%), Positives = 169/368 (45%), Gaps = 26/368 (7%)

Query: 6   RSTLVTLLIVLAVVIAAVVFMTRKPADKAAAAGPAPKPALTVTVAAPEATELTLTLAANG 65
           RS      ++ AV+ +A++      A + +A  P  KPALT  VA+  A++LT     NG
Sbjct: 7   RSMAAKRSLLSAVIASALLLAGCGEAPQISAPAPVVKPALTEIVASQRASDLTF----NG 62

Query: 66  NVAAWQEAVVGSESNGLKLAEVRVNVGDTVKKGQVLAVFSPETVRADIAQSRASLAEARA 125
            V A Q A +    +G +L ++ V  GD VKKGQ+LA         D   ++ +L  A+ 
Sbjct: 63  VVRAAQRADLAFRISG-RLTDIAVKEGDQVKKGQLLA-------SLDSRDAKTALEAAQL 114

Query: 126 TAADAAGNAARARTL-QATGALSQQQINQYQTTEQTAKARVEAAEAVLAAQEVRGRNTQV 184
              +      RA+ + + T A+S+ ++++       AK RVE A+  L         TQ+
Sbjct: 115 ELKNTEQEYRRAKAIFEKTQAISKAELDKVTNRYDLAKNRVEEAKRKL-------EYTQI 167

Query: 185 LAPDDGVISSRTATVGSVVAAGTELFKLIRQGRLEWRAEVTSAELSRIAVGTNAFV-VSA 243
            AP DGVIS +T    + V A   +  L     LE   E+    +      T A   +SA
Sbjct: 168 TAPFDGVISEKTIENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSA 227

Query: 244 SGAQ---VRGKVRSIAPTVDPQTRAALV-YVDLPNVQQNTGIKAGMFARGDFELGRSTAP 299
              Q   ++ +  S  P+ D QT + ++ + DL   +   G+ A +    D     +T  
Sbjct: 228 IPNQQFDLKLRTYSTQPSSDSQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLI 287

Query: 300 TVPQSAIVP-RDGFNNVFLLKPDNHVAQLKVQVGRRLNDRIEITSALPQGAKVVVQGAGF 358
           T+P +A+VP   G   V+++   N   +  V +G    DR+ IT  L  G +V++ G   
Sbjct: 288 TLPLTALVPDNQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSS 347

Query: 359 LNDGDLVR 366
           + +G  VR
Sbjct: 348 VREGMTVR 355