Pairwise Alignments

Query, 378 a.a., Secretion protein HlyD precursor from Variovorax sp. SCN45

Subject, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  102 bits (254), Expect = 2e-26
 Identities = 88/367 (23%), Positives = 166/367 (45%), Gaps = 29/367 (7%)

Query: 4   MKRSTLVTLLIVLAVVIAAVVFMTRKPADKAAAAGPAPKPALTVTVAAPEATELTLTLAA 63
           M ++T+++L ++  ++ +AV+          +A  P   PA++V   + ++ +++ +L+ 
Sbjct: 1   MNKNTVLSLTLLTLLMNSAVL----------SAKEPNQPPAISVVTESVQSQQISQSLSV 50

Query: 64  NGNVAAWQEAVVGSESNGLKLAEVRVNVGDTVKKGQVLAVFSPETVRADIAQSRASLAEA 123
            G + A Q   + +E  G K+  + V     VKKGQ+L       ++ D  +++A+L EA
Sbjct: 51  VGKLKAEQSVDIAAEVAG-KVDMIAVQANQQVKKGQIL-------IKLDDDKAQAALVEA 102

Query: 124 RATAADAAGNAARARTLQATGALSQQQINQYQTTEQTAKARVEAAEAVLAAQEVRGRNTQ 183
           +A   D          L    A++  +I+  +   +  +AR+ AA+A LA       +  
Sbjct: 103 KAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQARLNAAQANLA-------DLH 155

Query: 184 VLAPDDGVISSRTATVGSVVAAGTELFKLIRQGRLEWRAEVTSAELSRIAVGTNAFVVSA 243
           + AP DG +     + G  V+AG+EL  L     +    ++    L +++ G      S 
Sbjct: 156 ITAPFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLDLQIPERYLPQLSKGMKVQGSSE 215

Query: 244 S--GAQVRGKVRSIAPTVDPQTRAALVYVDLPNVQQNTGIKAGMFARGDFELGRSTAPTV 301
           +    Q  G V ++   ++ +T    V V  PN  Q   +K GM           +AP +
Sbjct: 216 AWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQR--LKPGMLMSARIHFPAISAPII 273

Query: 302 PQSAIVPRDGFNNVFLLKPDNHVAQLKVQVGRRLNDRIEITSALPQGAKVVVQGAGFLND 361
           P  A+        V+++  DN   + +V +G R+ +++ I   L  G K+VVQG   + D
Sbjct: 274 PVQALEYSGTKRFVYVIGEDNVAKRREVSLGARVENQVVIEKGLQIGEKIVVQGIVNMRD 333

Query: 362 GDLVRVV 368
              V  V
Sbjct: 334 NARVSEV 340