Pairwise Alignments

Query, 378 a.a., Secretion protein HlyD precursor from Variovorax sp. SCN45

Subject, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  112 bits (280), Expect = 2e-29
 Identities = 98/381 (25%), Positives = 173/381 (45%), Gaps = 23/381 (6%)

Query: 4   MKRSTLVTLLIVLAVVIAAVVFMTRKPADKAAAAGPAPKPALTVTVAAPEATELTLTLAA 63
           MK+ T   LLI + +  + + F   K    A      P+P   VTV      +    + A
Sbjct: 1   MKKWTFFMLLIAILLFGSVIGFNLFKQQKIAEYLANRPEPEFPVTVVTANPVDWVPVIEA 60

Query: 64  NGNVAAWQEAVVGSESNGLKLAEVRVNVGDTVKKGQVLAVFSPETVRADIAQSRASLAEA 123
            G +   Q   + +E+ G+ + ++    G  V K Q L +      RA++  + A L  A
Sbjct: 61  IGFIEPNQGVTLTTETAGV-IDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLPAA 119

Query: 124 RATAADAAGNAARARTLQATGALSQQQINQYQTTEQTAKARVEAAEAVLAAQEVRGRNTQ 183
           +A          R + L A G++S++  ++ + +     A +E+ +A +A +E++     
Sbjct: 120 KA-------KYERYKGLFAKGSISKESYDEAEASYYALSADIESLKATIARREIK----- 167

Query: 184 VLAPDDGVISSRTATVGSVVAAGTELFKLIRQGRLEWRAEVTSAELSRIAVG--TNAFVV 241
             AP  GVI  R   +G  +  GT++ +L     +  R  V   ++SRI++    + FV 
Sbjct: 168 --APFAGVIGIRNVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVD 225

Query: 242 SASGAQVRGKVRSIAPTVDPQTRAALVYVDLPNVQQNTGIKAGMFARGDFELGR-STAPT 300
           +      +G + +I P V  Q+    V  D+PN   +  +++GMFAR +  L +     T
Sbjct: 226 AYPQTSFKGSISAIEPAVSVQSGLIQVQADIPN--SDGKLRSGMFARANIILPKLENQVT 283

Query: 301 VPQSAIVPRDGFNNVFLLKPDN---HVAQLKVQVGRRLNDRIEITSALPQGAKVVVQGAG 357
           +PQ+AI      +NV+++  +N    V Q  V+VG R      I   +  G  VV  G  
Sbjct: 284 LPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGERSESIAHILEGVKPGDVVVTTGQV 343

Query: 358 FLNDGDLVRVVDTPPTAAAAK 378
            L++G  VR+V++  T   A+
Sbjct: 344 RLSNGAKVRIVESDATTPPAE 364