Pairwise Alignments

Query, 404 a.a., L-arabinose ABC transporter, permease protein AraH from Variovorax sp. SCN45

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  167 bits (424), Expect = 3e-46
 Identities = 125/377 (33%), Positives = 183/377 (48%), Gaps = 69/377 (18%)

Query: 28  KNNLREYGMLISLVAIMVLFQVLTDGTLLRPLNLTNLLLQNSYVVIMALGMLLVIVAGHI 87
           K  L E   LI+L+ ++V+   L         NL N+L Q S   I+A+GM LVI+   I
Sbjct: 26  KEWLIEQKSLIALLFLVVVVSFLNPNFFTVD-NLLNILRQTSVNAIIAVGMTLVILTAGI 84

Query: 88  DLSVGSVCGFIGALAAVLMVEYDWHFVPTAIVSILAGAVIGAAQGWFVAFRKIPSFIVTL 147
           DLSVGSV    GA AA L V  +   +     ++LAGA +GA                 +
Sbjct: 85  DLSVGSVLALCGAFAATL-VAMEVPVLVAVPTALLAGAALGA-----------------I 126

Query: 148 AGMLVFKGLTLALLAGQSVGPFPVEFQRLSSGFIPDPLGGDTLRITSLAVGALAAVALVF 207
           +G+++ KG   A +A                              T + +  L  V +V+
Sbjct: 127 SGIIIAKGKVQAFIA------------------------------TLVTMTLLRGVTMVY 156

Query: 208 FKLRGRARLAAHGMETEPYAFFLVKNLFFAAIILFFSYLLSTYKGLPNVLVVMAVLIVVY 267
               GR          + +A+F               Y L    G+P  + +M V+    
Sbjct: 157 TD--GRPISTGFTDTADTFAWFGT------------GYTL----GIPVPVWLMVVVFAGA 198

Query: 268 DFVTNRTTIGRRIYALGGNEKAARLSGVKTQRLAFLTFVNMGALAALAGLVFAARLNTAT 327
            ++ N T  GR +YA+GGNE A RLSG+   R+    +   G LAALAG++  +RL++A 
Sbjct: 199 WYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQ 258

Query: 328 PKAGLGFELDVIAACFIGGASASGGVGRVMGAVIGAFIMGVMNNGMSILGIGIDYQQVIK 387
           P AG+G+ELD IAA  +GG S  GG GR+MG +IGA I+G +NN +++L +   YQ + K
Sbjct: 259 PTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAK 318

Query: 388 GLVLLAAVFIDVYNKNK 404
            +V+L AV +D  NKNK
Sbjct: 319 AVVILLAVLVD--NKNK 333