Pairwise Alignments

Query, 404 a.a., L-arabinose ABC transporter, permease protein AraH from Variovorax sp. SCN45

Subject, 337 a.a., galactose/methyl galactoside ABC transporter permease MglC from Vibrio cholerae E7946 ATCC 55056

 Score =  144 bits (363), Expect = 4e-39
 Identities = 112/384 (29%), Positives = 173/384 (45%), Gaps = 74/384 (19%)

Query: 26  FLKNNLREYGMLISLVAIMVLFQVLTDGTLLRPLNLTNLLLQNSYVVIMALGMLLVIVAG 85
           F   +L+E G + +++ I++   V+ + + L   NL+N+L Q+S  VI+ALG+  +IV  
Sbjct: 9   FAIKHLKE-GAIYAVLFILLAIIVIQEPSFLSLRNLSNILTQSSVRVIIALGVAGLIVTQ 67

Query: 86  HIDLSVGSVCGFIGALAAVLMVEYD--------WHFVPTAIVSI---LAGAVIGAAQGWF 134
             DLS G   G    ++A L+   D           +P   V I   L GA+IG   G  
Sbjct: 68  GTDLSAGRQVGLAAVISATLLQSMDNVNKVFPSLGEIPILAVIISVCLIGAIIGLVNGVI 127

Query: 135 VAFRKIPSFIVTLAGMLVFKGLTLALLAGQSVGPFPVEFQRLSSGFIPDPLGGDTLRITS 194
           VA+ K+  FI TL  M++  G+    L   SVG                P+ G   R T+
Sbjct: 128 VAYLKVTPFIATLGTMIIVYGINS--LYYDSVGA--------------SPIAGFDERFTT 171

Query: 195 LAVGALAAVALVFFKLRGRARLAAHGMETEPYAFFLVKNLFFAAIILFFSYLLSTYKGLP 254
              G +      F  +                        F+A I + F ++L       
Sbjct: 172 FTQGFIRIGDFRFSYIT-----------------------FYAIIAIIFMWVL------- 201

Query: 255 NVLVVMAVLIVVYDFVTNRTTIGRRIYALGGNEKAARLSGVKTQRLAFLTFVNMGALAAL 314
                            N+T  G+ I+A+GGN +AA++SGV         +   G   A 
Sbjct: 202 ----------------WNKTVFGKNIFAVGGNPEAAKVSGVNVPLTLLKVYALSGVFYAF 245

Query: 315 AGLVFAARLNTATPKAGLGFELDVIAACFIGGASASGGVGRVMGAVIGAFIMGVMNNGMS 374
            G++ A R+ +AT   G  +ELD IAAC +GG S +GGVG + G V G  I  V+N GM+
Sbjct: 246 GGMLEAGRIGSATNNLGFLYELDAIAACVVGGVSFAGGVGSIAGVVTGVLIFTVINYGMT 305

Query: 375 ILGIGIDYQQVIKGLVLLAAVFID 398
            +G+   +Q +IKG +++ AV +D
Sbjct: 306 YIGVSPYWQYIIKGSIIIFAVALD 329