Pairwise Alignments

Query, 404 a.a., L-arabinose ABC transporter, permease protein AraH from Variovorax sp. SCN45

Subject, 330 a.a., sugar ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  144 bits (363), Expect = 4e-39
 Identities = 110/377 (29%), Positives = 180/377 (47%), Gaps = 74/377 (19%)

Query: 31  LREYGMLISLVAIMVLFQVLTDGTLLRPLNLTNLLLQNSYVVIMALGMLLVIVAGHIDLS 90
           +RE G++  ++++ V+    +   L    N   +L+  S   I+ +GM ++++ G IDLS
Sbjct: 23  MREAGLIAIILSLSVIMSFASPHFLTLG-NFRAMLMSFSVEGIVVVGMTILLIVGGIDLS 81

Query: 91  VGSVCGFIGALAA--VLMVEYDWHFVPTAIVSILAGAVIGAAQGWFVAFRKIPSFIVTLA 148
           VGSV  F   L+    LM    W     ++V I A A IG   G+F          VT+ 
Sbjct: 82  VGSVVCFSMVLSGSLFLMGVDPW---TASLVGIAASAAIGCIMGFF----------VTVV 128

Query: 149 GMLVFKGLTLALLAGQSVGPFPVEFQRLSSGFIPDPLGGDTLRITSLAVGALAAVALVFF 208
           G+  F                                           + +LAA+ +V  
Sbjct: 129 GLNHF-------------------------------------------ITSLAAMVIV-- 143

Query: 209 KLRGRARLAAHGMETEPYAFFLVKNLFFAAIILFFSYLLSTYKGLPNVLVVMAVLIVVYD 268
             RG   +   G    P + F +   F A           T+ G+P V+++   ++  +D
Sbjct: 144 --RGLCLVITKGT---PLSLFTLPPAFKAVG-------QGTFFGVPYVILIFIAVVGAFD 191

Query: 269 FVTNRTTIGRRIYALGGNEKAARLSGVKTQRLAFLTFVNMGALAALAGLVFAARLNTATP 328
           F+  R T  R+++  G NEKAA  SG+KT+ + F   V    L+ +AG ++ +R   ATP
Sbjct: 192 FLLRRATAFRKVFYTGSNEKAALYSGIKTKDVKFWVTVLCATLSGVAGTIYMSRFGAATP 251

Query: 329 KAGLGFELDVIAACFIGGASASGGVGRVMGAVIGAFIMGVMNNGMSILGIGIDYQQVIKG 388
             G+G EL++IAA  IGGAS +GG G ++GA++G  ++ V+ + + +L + + +Q +IKG
Sbjct: 252 TFGVGMELNIIAAAVIGGASLNGGSGTILGAILGIALLSVVTSSLILLDVSVYWQDMIKG 311

Query: 389 LVLLAAVFID-VYNKNK 404
            +LLAAV ID + NK K
Sbjct: 312 CILLAAVSIDHLLNKRK 328