Pairwise Alignments

Query, 356 a.a., L-arabinose ABC transporter, substrate-binding protein AraF from Variovorax sp. SCN45

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score = 58.5 bits (140), Expect = 2e-13
 Identities = 71/304 (23%), Positives = 126/304 (41%), Gaps = 30/304 (9%)

Query: 9   TLAGVALAVVGFTPLVHAQDKGLIAISMPTKSSARWIADGANMQKYFKDKGYKTDLQYAD 68
           TL   AL     + +  AQD   I +S         + DGA  +   K+ GY   +  + 
Sbjct: 8   TLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKA--KELGYNLIVLDSQ 65

Query: 69  DDIPNQLAQIENMVTKGSKVLVIAAIDGTTLSDVLQKAADKGVKVIAYDRLIKGSKNVDY 128
           +D   +L+ +E++  +G K ++I   D   +S+ ++ A    + V+  DR     + V +
Sbjct: 66  NDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGEVVSH 125

Query: 129 YATFDNFQVGVLQAQSIEAALGLKSGKGPFNIE-LFGGSPDDNNAFFFYNGAMSVLDPYI 187
            A+ DN   G +    IEA +G  S      +E + G S        F N         +
Sbjct: 126 IAS-DNVVGGEMAGHFIEAKIG--SDAKVIQLEGIAGTSAARERGEGFMNA--------V 174

Query: 188 KSGKLVVRSKQMGMDKVGTLRWDGAVAQARMDNLLSAYYTKDRVDAVLSPYDGLSIGILS 247
           K  K+ + + Q          +D       M+NLL+A      V AV +  D +++G L 
Sbjct: 175 KGSKMQLLASQ-------PADFDRTKGLNVMENLLAA---NPDVQAVFAQNDEMALGALR 224

Query: 248 SLKGVGYGSGSQPMPVVSGQDAEVPSIKSILRKEQTSTVFKDTRELAKVTVSMVDAMLSG 307
           +++     SG   M  + G D     I ++ R +  +TV +    +  + +   D ML G
Sbjct: 225 AIQ----ASGKSVM--IVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKG 278

Query: 308 KQPE 311
           ++ E
Sbjct: 279 EKVE 282