Pairwise Alignments

Query, 356 a.a., L-arabinose ABC transporter, substrate-binding protein AraF from Variovorax sp. SCN45

Subject, 311 a.a., monosaccharide ABC transporter substrate-binding protein, CUT2 family from Pseudomonas syringae pv. syringae B728a

 Score = 53.9 bits (128), Expect = 5e-12
 Identities = 75/341 (21%), Positives = 143/341 (41%), Gaps = 49/341 (14%)

Query: 7   KATLAGVALAVVGFTPLVHAQDKGLIAISMPTKSSARWIADGANMQKYFKDKGYKTDLQY 66
           K  L  +A+A++  +    A  K  +++S    +   ++ D  + +        K DLQ+
Sbjct: 4   KIALTSLAMALMLGSGAALADIKIGVSMSQFDDTWLTYLRDDMSAKAKVMSTTEKVDLQF 63

Query: 67  ADD--DIPNQLAQIENMVTKGSKVLVIAAIDGTTLSDVLQKAADKGVKVIAYDR------ 118
            D   D+  QL Q+++++ K    L++  +D    + + ++A   G+ ++  +R      
Sbjct: 64  VDARADVNKQLDQVKDLINKKVDALIVNPVDTAATARITKEAVAAGIPLVYVNRRPDDLN 123

Query: 119 LIKGSKNVDYYATFDNFQVGVLQAQSIEAALGLKSGKGPFNIELFGGSPDDNNAFFFYNG 178
           L  G   V    T D+ + G LQAQ I   +     K   ++ +  G   +N+      G
Sbjct: 124 LPAGVATV----TSDDVEAGRLQAQYIADKM-----KDKGDVMILLGDLANNSTQNRTKG 174

Query: 179 AMSVLDPY----IKSGKLVVRSKQMGMDKVGTLRWDGAVAQARMDNLLSAYYTKDRVDAV 234
              VLD Y    I+  +     +Q GMD   T  W   + Q R  N            AV
Sbjct: 175 VKEVLDKYPDIKIEEEQTGTYLRQKGMDL--TNDW---LTQGRKFN------------AV 217

Query: 235 LSPYDGLSIGILSSLKGVGYGSGSQPMPVVSGQDAEVPSIKSILRKEQTSTVFKDTRELA 294
           L+  D ++IG   +LK  G   GS    +++G D     + ++ + +   +V++D +  A
Sbjct: 218 LANNDEMAIGAAMALKQAGVEKGS---ILIAGVDGTPDGLNAVTKGDLAVSVYQDAKGQA 274

Query: 295 KVTVSMVDAMLSGKQPEVNDTKTYNNGIKVVPSYLLKPVSV 335
                 +DA +   + E  + +       ++P  L+ P +V
Sbjct: 275 D---GAIDAAVKLARKEKIEPQAI-----IIPYRLITPENV 307