Pairwise Alignments

Query, 321 a.a., Galactofuranose ABC transporter, substrate-binding protein from Variovorax sp. SCN45

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score =  112 bits (280), Expect = 1e-29
 Identities = 77/275 (28%), Positives = 132/275 (48%), Gaps = 14/275 (5%)

Query: 3   MNRRTLNTALAAAALGSMLPVSVFAQKKLVLGFAQVGAESEWRTANTESIKSSAKDAGIE 62
           M  + L T ++AA L +   VS  AQ +  +        + +     +  ++ AK+ G  
Sbjct: 1   MRMKKLTTLISAALLSTS--VSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYN 58

Query: 63  LKFSDAQQKQENQIKAIRSYIAQKVDVIAFSPVVESGWETVLREAKAAKIPVVLTDRSVS 122
           L   D+Q     ++  +     + V  I  +P         +R A  +KIPV+  DR  S
Sbjct: 59  LIVLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGAS 118

Query: 123 TKDDSLYVTFMGSDFIEEGRKAGRWLVEKMKDQKGDVNIVELQGTVGSAPAIDRKKGFEE 182
             +    V+ + SD +  G  AG ++  K+     D  +++L+G  G++ A +R +GF  
Sbjct: 119 RGE---VVSHIASDNVVGGEMAGHFIEAKI---GSDAKVIQLEGIAGTSAARERGEGFMN 172

Query: 183 IIKADPKFKIIRSQTGDFTRAKGKEVMEAFLKADGKKINVLFAHNDDMAIGAIQAIEEAG 242
            +K   K +++ SQ  DF R KG  VME  L A+   +  +FA ND+MA+GA++AI+ +G
Sbjct: 173 AVKGS-KMQLLASQPADFDRTKGLNVMENLLAAN-PDVQAVFAQNDEMALGALRAIQASG 230

Query: 243 LKPAKDIVIISIDGVKGAFEAMIAGKLNVSVECSP 277
               K ++I+  DG      A+  G+L  +V   P
Sbjct: 231 ----KSVMIVGFDGTDDGIAAVERGQLAATVAQQP 261