Pairwise Alignments

Query, 327 a.a., Transcriptional regulator, LysR family from Variovorax sp. SCN45

Subject, 303 a.a., glycine cleavage system transcriptional activator, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  159 bits (403), Expect = 6e-44
 Identities = 103/295 (34%), Positives = 153/295 (51%), Gaps = 10/295 (3%)

Query: 9   RSRPISAGHLRAFEAVARHLNFRAAAEEMALTQSAVSRQIQSLEEEVGVALFLRHTRAVE 68
           R  P++A  ++AFEA ARHL+F  AAEE+ +TQ+AVS QI++LE+ +G+ LF R  R++ 
Sbjct: 4   RLPPLNA--VKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLL 61

Query: 69  LTSAGAQLLLAVQQSLPRIDTAVRQIRQSAGRKSVSLTTFASFASMWLIPRLEAFQRDNP 128
           LT  G    L ++    ++  A  ++   +   S++++   SFA  WL+PRL  F   NP
Sbjct: 62  LTEEGQSYFLDIKDIFIQLADATDRLLARSAIGSLTVSMSPSFAIQWLVPRLSKFSEKNP 121

Query: 129 EIDIRIDASDVAVDLEVADVDIALRYGPREVMPAGAVRLFGETLTPVASPWLLKSSPPIK 188
           EID+RI A D        DVD+A+ YG        A +L  E L PV SP LL    P+ 
Sbjct: 122 EIDVRIKAVDTEASSLTDDVDVAIYYGLGNWPGLRADKLRNEVLIPVCSPMLLNGPKPLS 181

Query: 189 TPADITRFTLIEAGDAHRTHLEWLTWRRWFEVNGQERAQPKRWLYFNYAYQMVQAALTGQ 248
            P D+   TL+     H        W+ WF   G       +   F+++  ++QAA  GQ
Sbjct: 182 KPEDLKHHTLLHDMSRH-------DWQAWFRQCGITDINVNQGPIFSHSSLVLQAAAHGQ 234

Query: 249 GVTLARSSLIAESLANGDLVEVLPQHRMDSPMAYWLIAGPRNALRPEIKAFWDWL 303
           GV L  S L    +  G LV    Q  + S  AY+L+    +A   ++ AF +W+
Sbjct: 235 GVALGYSVLARPDIKAGRLVCPF-QEVLVSKDAYYLVCQQNHAELGKVVAFREWM 288