Pairwise Alignments

Query, 241 a.a., Outer membrane protein W precursor from Variovorax sp. SCN45

Subject, 217 a.a., outer membrane protein W from Vibrio cholerae E7946 ATCC 55056

 Score =  105 bits (262), Expect = 7e-28
 Identities = 71/242 (29%), Positives = 109/242 (45%), Gaps = 26/242 (10%)

Query: 1   MKKTVFALAALGALASGSAMAQQAGDWVIGTGWFHLSPQDSSKPLTVTSPVPAVLPGSGA 60
           MK+T+  LA L AL+S    A Q GD+++  G   + P DSS  +  T         S  
Sbjct: 1   MKQTICGLAVLAALSSAPVFAHQEGDFIVRAGIASVVPNDSSDKVLNTQ--------SEL 52

Query: 61  SVSDSDTLGLNATYFLDSNWAVEGVFGVPPKFKLNGTG-TLGRVGQLGEARQWSPTILGK 119
           +V+ +  LGL   Y    N + E +   P   K++ +G  LG +G +GE +   PT + +
Sbjct: 53  AVNSNTQLGLTLGYMFTDNISFEVLAATPFSHKISTSGGELGSLGDIGETKHLPPTFMVQ 112

Query: 120 YFFNDANSAFRPFVGLGATYVWYSDVKLTSNLQSALASQFGVSPFGVNTTAKLDSKFAPV 179
           Y+F +ANS FRP+VG G  Y  + D        +A  S             KLD  +   
Sbjct: 113 YYFGEANSTFRPYVGAGLNYTTFFDESFNGTGTNAGLSDL-----------KLDDSWGLA 161

Query: 180 LNAGVAYQFDKHWGVSFSVSYIPLKTTAKLTTTSITGLPVATSQASLKLNPIVTYLAATY 239
            N G  Y  +  W ++ SV Y  ++TTA     +            +++NP V  +A  Y
Sbjct: 162 ANVGFDYMLNDSWFLNASVWYANIETTATYKAGA------DAKSTDVEINPWVFMIAGGY 215

Query: 240 RF 241
           +F
Sbjct: 216 KF 217