Pairwise Alignments

Query, 395 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 448 a.a., D-lactate transporter, substrate binding component (from data) from Phaeobacter inhibens DSM 17395

 Score = 52.0 bits (123), Expect = 3e-11
 Identities = 69/342 (20%), Positives = 140/342 (40%), Gaps = 33/342 (9%)

Query: 65  VNGKKIVVIEKDDQGKPDLGKSLLAAAYSDDKAALAIGPTASGVALAMLPVAEEYKKILL 124
           + GK++  +  D Q K D  ++   +    D A +  G ++SGVA+A+  + +E   I +
Sbjct: 97  IMGKEVKFVTGDTQTKSDAARASAKSMIEKDGAVMITGGSSSGVAIAVQGLCQEAGVIFM 156

Query: 125 VEPAVADSITGDKWNKYIFRTGRNSSQD------AISNAVAVDKPGVTVATLAQDNAFGR 178
                ++  TG       FR   N           + N    D+       L  D  +G 
Sbjct: 157 AGLTHSNDTTGKDKKANGFRHFFNGYMSGAALAPVLKNLYGTDR---NAYHLTADYTWGW 213

Query: 179 DGVKAFGSALKKA--KLVHEEYLPPATTDFTAGAQRLIDKLKDQPGRKIIWIVWAGAGNP 236
              ++  +A +      V++   P A TDF++    +++   D      + ++    GN 
Sbjct: 214 TQEESIAAATEALGWNTVNKVRTPLAATDFSSYIAPVLNSGAD------VLVLNHYGGNM 267

Query: 237 FKIVDLDLKRYGI--EIATGGNI---------LPAMAAYKALPGMEGAAYYYFGIPKNPV 285
              +  +  ++G+  ++  G N          L A  A   + G+ G+  +++ + ++  
Sbjct: 268 VNSL-TNAVQFGLREKVVNGKNFEIVVPLYSRLMAKGAGANVKGIHGSTNWHWSL-QDEG 325

Query: 286 NDAMVSAHYKEFKTPPDFFTAGGFSAAMAVVTALKKTGGDTNTNKLISTMEGMSFD-TPK 344
           + A V +   ++  PP       +   +    A+++  G  N   ++  +EG  FD    
Sbjct: 326 SQAFVRSFGSKYGFPPSQAAHTVYCQTLLYADAVER-AGSFNPCAVVEALEGFEFDGLGN 384

Query: 345 GKMTFRKEDHQAMQSMYHFKIKVDPAFAWGVPELVHEIKPEE 386
           GK  +R EDHQ  + +   + K +P   + + E+V E+ P E
Sbjct: 385 GKTLYRAEDHQCFKDVLVVRGKENPTSEFDLLEVV-EVTPAE 425