Pairwise Alignments

Query, 464 a.a., DNA repair protein RadA from Variovorax sp. SCN45

Subject, 458 a.a., DNA repair protein RadA from Vibrio cholerae E7946 ATCC 55056

 Score =  463 bits (1192), Expect = e-135
 Identities = 246/461 (53%), Positives = 327/461 (70%), Gaps = 13/461 (2%)

Query: 1   MAKDKTTFVCSECGGTSPKWLGKCPSCGAWNTLIEQAAGAAGGGPANNRFGTQFASLAGA 60
           M K K  +VC+ECG   P+W G+C +CG+WN++ E    A+     N R        AGA
Sbjct: 1   MVKAKRAYVCNECGADFPRWQGQCNACGSWNSISEVRLAASPQVARNERL----VGYAGA 56

Query: 61  SE--LATLSEIEATDVARTPTGLDELDRVLGGGIVSGGVTLIGGDPGIGKSTLLLQAVDA 118
            E  + TL++I+  +V R  +G  ELDRVLGGGIV G   LIGG+PG GKSTLLLQ +  
Sbjct: 57  LEAKVQTLADIDLQEVPRFTSGFKELDRVLGGGIVPGAAILIGGNPGAGKSTLLLQTMCL 116

Query: 119 LQRAGQN-ALYVTGEESGSQVALRSKRLGLDHSQVQVLAEIQLEKIIATLDATRPAIAVI 177
           L  +GQ   LYVTGEES  QVA+R+ RLGL    +++L+E  +++I    +  +P I VI
Sbjct: 117 L--SGQMPTLYVTGEESLQQVAMRASRLGLPKQHLKMLSETNVDRICQIAEQEKPRIMVI 174

Query: 178 DSIQTVYSDQLTSAPGSVAQVRECAAHLTRFAKTSGTAVVLVGHVTKEGALAGPRVLEHM 237
           DSIQ ++   + S+PGSVAQVRE A  LTR+AK +  AV +VGHVTK+G LAGP+VLEH+
Sbjct: 175 DSIQVMHVADVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLEHI 234

Query: 238 VDTVLYFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTERGLKGVTNPSAIFLSQHAEPVP 297
           +D  +  +GDT S FR +R+ KNRFGAVNE+GVFAMT +G++ V+NPSAIFLS+  E   
Sbjct: 235 IDCSILLDGDTDSRFRTLRSHKNRFGAVNELGVFAMTGQGMREVSNPSAIFLSRGEEATS 294

Query: 298 GSVVLVTLEGTRPMLVEIQALVDNGG-PSPRRLSVGLDRDRLAMLLAVLHRHAGVACMDQ 356
           GS V+V  EGTRP+LVEIQALVD     +PRR++VGL+++RL++LLAVLH+H G+   DQ
Sbjct: 295 GSSVMVVWEGTRPLLVEIQALVDYSQLANPRRVAVGLEQNRLSLLLAVLHKHGGLQMADQ 354

Query: 357 DVFVNAVGGVRISEPAADLAVMLAITSSLRGKPMPKGFIAFGEVGLAGEVRPAPRGQERL 416
           DVFVN VGGV+++E +ADLA+++A+ SS R +P+PK  + FGEVGLAGE+RP P GQERL
Sbjct: 355 DVFVNVVGGVKVTETSADLALLMALLSSFRDRPLPKDVVVFGEVGLAGEIRPVPSGQERL 414

Query: 417 REAAKLGFSVAVVPKANAPRKGTKEIEGLTIHAVDRIEEAM 457
            EA K GF  A+VP AN P+ G   IEG+ IH V ++ +A+
Sbjct: 415 NEAFKHGFKKAIVPIANMPKGG---IEGMQIHGVKKLSDAI 452