Pairwise Alignments

Query, 464 a.a., DNA repair protein RadA from Variovorax sp. SCN45

Subject, 454 a.a., DNA repair protein RadA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  479 bits (1234), Expect = e-140
 Identities = 252/463 (54%), Positives = 330/463 (71%), Gaps = 12/463 (2%)

Query: 1   MAKDKTTFVCSECGGTSPKWLGKCPSCGAWNTLIEQAAGAAGGGPANNRFGTQFASLAGA 60
           MAK+KT +VC+ECG   P+W G+C +C  WNT+ E   GAA  G      GT+FA  AGA
Sbjct: 1   MAKNKTAYVCNECGQDFPRWQGQCSACHEWNTITEVRLGAASPGR-----GTKFAGYAGA 55

Query: 61  --SELATLSEIEATDVARTPTGLDELDRVLGGGIVSGGVTLIGGDPGIGKSTLLLQAVDA 118
             SE+ TL +I+   + R  +   ELDRVLGGGIV G   LIGG PG GKSTLLLQ +  
Sbjct: 56  GSSEVKTLDQIDLNALPRIVSHFGELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQTLCH 115

Query: 119 LQRAGQNALYVTGEESGSQVALRSKRLGLDHSQVQVLAEIQLEKIIATLDATRPAIAVID 178
           L      ALYVTGEES  QVA+R+ RLGL  +++++L+E  +E+I        P + V+D
Sbjct: 116 LAEQ-MPALYVTGEESLQQVAMRAHRLGLPTNKLRMLSETSVEQICEIALQESPKVIVVD 174

Query: 179 SIQTVYSDQLTSAPGSVAQVRECAAHLTRFAKTSGTAVVLVGHVTKEGALAGPRVLEHMV 238
           SIQ ++   + S+PGSV+QVRE A++LTRFAK  G AV++VGHVTK+G+LAGP+VLEH +
Sbjct: 175 SIQVMHMSDVASSPGSVSQVRESASYLTRFAKQHGIAVIMVGHVTKDGSLAGPKVLEHCI 234

Query: 239 DTVLYFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTERGLKGVTNPSAIFLSQHAEPVPG 298
           D  + FEGD+ S +R +R+ KNRFGA+NE+GVFAMTERGLK V NPSAIFLS+  E   G
Sbjct: 235 DCSVMFEGDSDSRYRTLRSHKNRFGAINELGVFAMTERGLKEVANPSAIFLSRGEEESSG 294

Query: 299 SVVLVTLEGTRPMLVEIQALVDNGGPS-PRRLSVGLDRDRLAMLLAVLHRHAGVACMDQD 357
           S+V+V  EGTRP+LVE+Q LVDN   S PRR++VG+D +RLAMLLAV+HRH G+   DQD
Sbjct: 295 SLVMVVWEGTRPLLVELQVLVDNSAMSNPRRVAVGMDANRLAMLLAVMHRHGGLQMSDQD 354

Query: 358 VFVNAVGGVRISEPAADLAVMLAITSSLRGKPMPKGFIAFGEVGLAGEVRPAPRGQERLR 417
           VFVN VGGV+++E +ADL ++LA+ SS RG  +P   + FGEVGL+GE+RP P GQERL 
Sbjct: 355 VFVNVVGGVKVTETSADLTLLLAMVSSFRGDILPSDLVVFGEVGLSGEIRPVPNGQERLV 414

Query: 418 EAAKLGFSVAVVPKANAPRKGTKEIEGLTIHAVDRIEEAMDVV 460
           EAAK GF  A+VP+AN P+K      G+ +  V ++ EA++ +
Sbjct: 415 EAAKHGFKRAIVPRANVPKKPP---VGMEVVGVSKLSEALEAI 454