Pairwise Alignments

Query, 355 a.a., ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 426 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  119 bits (299), Expect = 1e-31
 Identities = 94/348 (27%), Positives = 165/348 (47%), Gaps = 43/348 (12%)

Query: 13  RSRLLALLLVVLFLALAFAPFIFPGVKALSVAAKILVFVVLVASFDLLLGYTGIVSFAHT 72
           +SRL  ++  ++ +A+ F PF F     L+V    L++V+L    ++++G  G++   + 
Sbjct: 93  KSRLRWIIPALIVIAIVF-PF-FANKYVLTVVILGLIYVLLGLGLNIVVGLAGLLDLGYV 150

Query: 73  MFFGIGAYGIAISASRLGPNWGAVL--VGLGASLAISLVLSFAIGLFSLRVRAIFFAMIT 130
            F+ IGAYG+A+    LG  +  VL    + A++A   +L F +    LR+   + A++T
Sbjct: 151 AFYAIGAYGLALGYQYLGLGFWTVLPLAAIAAAMA-GCILGFPV----LRMHGDYLAIVT 205

Query: 131 LAVASAFQTLASQLSDFTGGEDGLTFKLPELISPSF---------EFSEEPFLGVSLDGR 181
           L      + + +    FTGG +G+    P  +   F          F E  F G+  +  
Sbjct: 206 LGFGEIIRLVLNNWLSFTGGPNGMPVPSPTFLGLEFGRRAKDGGVPFHE--FFGIDYNPN 263

Query: 182 ---LLCYYLLFVAAVVLVLALLRIVNSPFGRVLQAIRENEFRAEAIGYRVVVYRTTAAVL 238
              L  Y +LF+  ++++    R+   P GR  +A+RE+E    ++G   V+ + +A  +
Sbjct: 264 IKFLFIYIVLFITVLLVLYVKHRLTRMPVGRAWEALREDEIACRSMGLNHVLVKLSAFTI 323

Query: 239 SALFATLAGAMLAIWLRYNGPDTSLSFEIMIDVLLIVVIGGMGTIYGAAIGAVLFVIAQS 298
            A  A LAG   A +  +  P +   FE  + +L IVV+GGMG+  G  I A +  +A  
Sbjct: 324 GASTAGLAGVFFASYQGFVNPSSFTFFESAL-ILAIVVLGGMGSTVGVVIAAFVLTVA-- 380

Query: 299 YLQDLLRIGNEAASGLPWLAALLSPDRWLLWLGVLFVLSVYYFPTGIV 346
              +LLR  +E                 +L  GVL VL + + P G++
Sbjct: 381 --PELLRSFSEYR---------------VLLFGVLMVLMMIWRPRGLI 411