Pairwise Alignments

Query, 657 a.a., Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) from Variovorax sp. SCN45

Subject, 580 a.a., penicillin-binding protein 3 from Vibrio cholerae E7946 ATCC 55056

 Score =  173 bits (439), Expect = 2e-47
 Identities = 155/596 (26%), Positives = 265/596 (44%), Gaps = 93/596 (15%)

Query: 25  VLFAFGLLCARLVYLQVTRHEDLAEQAESNRTAVVPVVPNRGLILDRNGIVLASNYSAYT 84
           VL AF  L AR+ Y+Q+   ++L ++ +        +   RG+I DRNG  LA +     
Sbjct: 37  VLTAFCALVARVAYIQIIEPDNLIKEGDLRSIRAKTLQSARGIISDRNGEALAVSVPVEA 96

Query: 85  LEITPSKV----GDVEETIDSLTQVLEISPRDRRRFKRLREDSRSFDSIPIRTRLSDEEV 140
           +   P  +    G VE+  D    + ++   DR+   +  ED+RS   I ++ ++S   +
Sbjct: 97  VWADPVAIYKEGGLVEK--DRWYALADVLGLDRQEMMKKIEDNRSRRFIYLQRQVSPA-M 153

Query: 141 ARFAAQRYRFPGVEIKARLFRNYPQGELASHVLGYIGRINQREKTAMEDWDEEEQANYKG 200
           A++  +  +  G+ +K    R YP GE+++H++G  G                       
Sbjct: 154 AKYIRE-LKLAGIGLKEESRRYYPAGEVSAHLVGVTG----------------------- 189

Query: 201 TDYIGKLGIEQSYEKTLHGQTGVEQMETSAGGRAVRRLASHPATPGNTVMLSLDIKLQKL 260
            D  G  G+E+S++ TL G++G         GR V  +A      G  + L++D +LQ +
Sbjct: 190 IDGHGLEGVERSFDSTLTGESGKSVTRKDKFGRVVENIALEEREEGKPIQLTIDQRLQAI 249

Query: 261 ----VEDMFGDRRG---AVVAIDPKTGEVLAFVSKPTFDPNLFVEGIDNESWAALTESID 313
               V+    D R    + V +D KTG VLA V+ P+++PN      +   W +      
Sbjct: 250 AFRAVKQAMADYRATSASAVMLDVKTGAVLAMVNAPSYNPN------NRNDWQSFK---- 299

Query: 314 KPLLNRALRGTYPPGSTYKPFMALAALQTGKRGPSVVVND-PGYFNFGGHRFGSPEGNLG 372
             + NR +   + PGST KPF+ LAAL  G    + +++   G    GG R       +G
Sbjct: 300 --MRNRVITDAFEPGSTVKPFVVLAALANGIADKNTIIDTGDGTMQIGGSRVRDTS-KVG 356

Query: 373 GVDMRRAIQLSSNIYFYSLANEMGVDLIHDSMKPLGFGQITGIDLGGEVRGVLPSTEWKR 432
             D+   ++ SSNI    LA EM ++ +      +G G+++G+DL GE  G+ P+     
Sbjct: 357 KADLTLILKKSSNIGVAKLALEMPLEALLGMYSSVGLGEMSGLDLVGETIGIFPN----- 411

Query: 433 NAYKRPEAKKWYAGETISLGIGQGYNNFTMLQLAQATAIVADGGLKHKPHLVLATRNTVS 492
                   ++W   E  +L  G G    T +QLA A A + + G     H++   ++  +
Sbjct: 412 -------RRRWSQFEIATLSFGYGL-AITPIQLAHAYATLGNHGKYQPIHIIKGDQHGET 463

Query: 493 GQVVPMPQPPAENLGYTASAISVIREGLTSVVTSGTARGVFAGAAYQAAGKTGTA-QAVT 551
            QVV                ++ + E L +V   G      A   Y+ A K+GT+ +A+ 
Sbjct: 464 RQVV------------DPKYVNQVLEMLETVTQPGGTATRAAVPGYRIAAKSGTSRKAIA 511

Query: 552 QAQNTKYNARALEEHQRDHALFMGFAPVNDPKIAIAVIVE----NAGWGAGAAAPI 603
              + +Y            A   G APV+DP+I++ V+V     ++ +G   A P+
Sbjct: 512 GGYSDEY-----------FAYTAGVAPVSDPRISLVVMVNEPQGDSYYGGAVAGPV 556