Pairwise Alignments

Query, 657 a.a., Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) from Variovorax sp. SCN45

Subject, 633 a.a., penicillin-binding protein 2 from Klebsiella michiganensis M5al

 Score =  457 bits (1177), Expect = e-133
 Identities = 246/613 (40%), Positives = 370/613 (60%), Gaps = 17/613 (2%)

Query: 5   RNVAADLARFKRRVIVIGLAVLFAFGLLCARLVYLQVTRHEDLAEQAESNRTAVVPVVPN 64
           R+  A+ + F RR +V  L +L   G+L A L  +Q+ R+ D   ++  NR  +VP+ P+
Sbjct: 8   RDYTAESSLFVRRALVAFLGILLLTGVLIANLYNVQIVRYTDYQTRSNENRIKLVPIPPS 67

Query: 65  RGLILDRNGIVLASNYSAYTLEITPSKVGDVEETIDSLTQVLEISPRDRRRFKRLREDSR 124
           RG+I DRNG  LA N + Y LE+ P KV +V++T+D+L  V++++  D   FK+ R  S 
Sbjct: 68  RGIIYDRNGTPLALNRTIYQLEMMPEKVDNVQQTLDALRDVIDLTDDDVANFKKERARSH 127

Query: 125 SFDSIPIRTRLSDEEVARFAAQRYRFPGVEIKARLFRNYPQGELASHVLGYIGRINQREK 184
            F SIP++  LS+ +VARFA  +YRFPGVE+K    R YP     +HV+GY+ +IN ++ 
Sbjct: 128 RFTSIPVKVNLSEVQVARFAVNQYRFPGVEVKGYKRRYYPYNSALTHVIGYVSKINDKDV 187

Query: 185 TAMEDWDEEEQANYKGTDYIGKLGIEQSYEKTLHGQTGVEQMETSAGGRAVRRLASHPAT 244
             ++   E + ANY  T  IGKLGIE+ YE  LHGQTG E++E +  GR +R+L   P  
Sbjct: 188 DRLDK--EGKLANYASTHDIGKLGIERYYEDVLHGQTGYEEVEVNNRGRVIRQLKEVPPQ 245

Query: 245 PGNTVMLSLDIKLQKLVEDMFGDRRGAVVAIDPKTGEVLAFVSKPTFDPNLFVEGIDNES 304
            G  + L+LD+KLQ+ +E +    R AVV  DP+TG +LA VS P++DPNLFV+GI ++ 
Sbjct: 246 AGRDIYLTLDLKLQQYIETLLAGSRAAVVVTDPRTGAILALVSTPSYDPNLFVDGISSKD 305

Query: 305 WAALTESIDKPLLNRALRGTYPPGSTYKPFMALAALQTGKRGPSVVVNDPGYFNFGG--- 361
           ++ L    + PL+NRA +G YPP ST KP++A++AL  G    +  + DPG++   G   
Sbjct: 306 YSGLLNDPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVITRNTSLFDPGWWQLPGSDK 365

Query: 362 -HRFGSPEGNLGGVDMRRAIQLSSNIYFYSLANEMGVDLIHDSMKPLGFGQITGIDLGGE 420
            +R     G+ G +++ +A++ S++ YFY +A +MG+D + + M   G+G  TG+DL  E
Sbjct: 366 RYRDWKKWGH-GHLNVTKALEESADTYFYQVAYDMGIDRLSEWMGKFGYGHYTGVDLAEE 424

Query: 421 VRGVLPSTEWKRNAYKRPEAKKWYAGETISLGIGQGYNNFTMLQLAQATAIVADGGLKHK 480
             G +P+ EWK   +K+P    WY G+TI +GIGQGY   T +Q+ +A  I+ + G+   
Sbjct: 425 RSGNMPTREWKLKRFKKP----WYQGDTIPVGIGQGYWTATPIQMNKALMILINDGVVKV 480

Query: 481 PHLVLATRNTVSGQVVPMPQPPAENLGYTASAI-SVIREGLTSVVT--SGTARGVFAGAA 537
           PHL+ +T     G+ VP  QP    +G   S    + ++G+  V    +GTA   FA A 
Sbjct: 481 PHLLQST--VEDGKPVPWVQPHEPPVGDIHSGFWEIAKDGMFGVANRGNGTAHKYFASAP 538

Query: 538 YQAAGKTGTAQAVTQAQNTKYNARALEEHQRDHALFMGFAPVNDPKIAIAVIVENAGWGA 597
           Y+ A K+GTAQ      N  YNA  + E  RDH L   FAP N+P++A+A+I+EN G G 
Sbjct: 539 YKIAAKSGTAQVFGLKANETYNAHRIAERLRDHKLMTAFAPYNNPQVAVAIILENGGAGP 598

Query: 598 GAAAPIARRVFDY 610
            A   I R++ D+
Sbjct: 599 -AVGTIMRQILDH 610