Pairwise Alignments

Query, 410 a.a., Tetracycline resistance, MFS efflux pump => Tet(C) from Variovorax sp. SCN45

Subject, 477 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

 Score = 78.2 bits (191), Expect = 5e-19
 Identities = 45/143 (31%), Positives = 79/143 (55%), Gaps = 5/143 (3%)

Query: 28  LDAIGISLVMPIVPSLLREVGHTGDLGWRFGAFLSLYALMQFLCAPVLGALSDRFGRRPV 87
           L A+  +L+    P+++R++G+     W        Y L      PV G L D++GR+P+
Sbjct: 23  LAAVDQTLLATATPAIVRDLGNLQLSSW----IAIGYMLASAASVPVYGWLGDQYGRKPM 78

Query: 88  LLISVAGSAIDALFMAFAPSLWMLFLGRAIAGM-TGASTAVASAAIADLTPENQRARWFG 146
           L+I+++  A+ ++  AFA ++  L  GR + G+ +G   +++ A I +L P  +RAR+ G
Sbjct: 79  LMIALSIFALGSVICAFAMNMPWLVAGRIVQGLGSGGLMSLSQALIGELVPPRERARFQG 138

Query: 147 RMGACFGLGFIAGPAIGGVLGDY 169
              + F +  I GP +GGVL  Y
Sbjct: 139 YFSSLFAVASIGGPVLGGVLVTY 161



 Score = 35.4 bits (80), Expect = 4e-06
 Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 3/118 (2%)

Query: 280 VAGPLVERWGERAAIAVGIIADGTGYALIAFA-TQGWMAIAMLPLLCMGGVCAPALQATL 338
           V G L +++G +  + + +     G  + AFA    W+    +      G      QA +
Sbjct: 65  VYGWLGDQYGRKPMLMIALSIFALGSVICAFAMNMPWLVAGRIVQGLGSGGLMSLSQALI 124

Query: 339 SARVGQAQQGRLQGVLASITSLAAVFGPLL--ISPLYFAFRTRFPGIVWLAGASLYLL 394
              V   ++ R QG  +S+ ++A++ GP+L  +   Y +++  F   + L G +LY L
Sbjct: 125 GELVPPRERARFQGYFSSLFAVASIGGPVLGGVLVTYLSWQWLFWFNLPLVGIALYRL 182



 Score = 28.9 bits (63), Expect = 3e-04
 Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 6/108 (5%)

Query: 279 FVAGPLVERWGERAAIAV-GIIADGTGYALIAFATQGWMAIAMLPLLC-MG-GVCAPALQ 335
           +  G ++ + G    + V G+      +A++A  +     ++ +  LC +G G   P+ Q
Sbjct: 319 YTTGKVIAKTGVPKFLPVFGMSLSSCAFAVLAMFSLSAPVVSAIAALCGLGLGTVMPSTQ 378

Query: 336 ATLSARVGQAQQGRLQGVLASITSLAAVFGPLLISPLYFAFRTRFPGI 383
             +    G+A  GR+  + +   SL A  G      L ++     PG+
Sbjct: 379 VLVQTLAGKANLGRITAMASLSRSLGASVGTAFFGTLIYSL---LPGL 423