Pairwise Alignments

Query, 350 a.a., ABC transporter spermidine/putrescine-binding protein from Variovorax sp. SCN45

Subject, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 51.6 bits (122), Expect = 3e-11
 Identities = 65/280 (23%), Positives = 119/280 (42%), Gaps = 22/280 (7%)

Query: 16  ALLAAAGTAGAQTKTIYIGMNGGTMEKAYTQYVFPAFEKAYGAKVVVVPGTSSDIL-AKA 74
           AL   +GTA A+ K + + MN G         +   F K  G KV+     S++ L AK 
Sbjct: 14  ALSLLSGTAAAEDKEL-VFMNWGPY---INSGILEQFTKETGIKVIYSTYESNETLYAKL 69

Query: 75  QANKDKPQMHV-------MFLDDGVMVRAIGMGLCQ-KQKPSQSLSEIYPAARFKDDMAS 126
           + +     + V          D+G++ +     L   K   S  L + Y      +D + 
Sbjct: 70  KTHNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLDKPYDP---NNDYSI 126

Query: 127 GVSLGMTGLAYNAKMFKEKGWAPPTSWMDLADPKYKGKVVFQSMSSSSFGLHGFLMFNRI 186
              + +TGLA N  M+    +    SW DL  P+ KG+++    +   F +    +    
Sbjct: 127 PHVVAITGLAVNTDMYDPNDFQ---SWGDLWKPELKGQLMLMDDTREVFHIALRKLGYSG 183

Query: 187 QGGNDRNVEPGFKAWPTTIGPNVLEYIPSSAKLSEMVQTGEAAIFPLTPTAVAALKTKGI 246
              +D+ ++  + A    + PNVL +  +S   +    +GE  +  L   + AA + +G+
Sbjct: 184 NSTDDKQIDEAY-AELQKLMPNVLVF--NSDNPAAPYLSGEVGLGMLWNGSAAAAQKEGL 240

Query: 247 PVEYAPPKEGAVVLMVGQCVIANNSEPELSQKLAEFLLSP 286
           P++   PKEG +  +    + +     + + K+ +FLL P
Sbjct: 241 PIKLVFPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRP 280