Pairwise Alignments

Query, 427 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

Subject, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

 Score =  324 bits (830), Expect = 5e-93
 Identities = 197/440 (44%), Positives = 261/440 (59%), Gaps = 33/440 (7%)

Query: 1   MPFDSLGLAPALVHAAAESGYAAPTAIQAAAIPAILQGRDVRGSAQTGSGKTAAFSLPLL 60
           M F SLGL+ ALV A   +GY  PT +Q  AIPA+LQGRD+  +AQTG+GKT  F+LP+L
Sbjct: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  QRLGAERPPGSTRR-----VRALVLVPTRELAAQVGETLRSLAQHLPERLKIVVA--FGG 113
           +RL     P  ++R      R LVL PTRELAAQV E+ +  A+ L    K V A  FGG
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDL----KFVSACIFGG 116

Query: 114 VSINPQMMSLRGGADIVVATPGRLLDLADHNALRLDAVATLVLDEADRLFDLGFAEELGR 173
           V +NPQ+ ++  G D++VA PGRLLDLA   ++ L  V  LVLDEADR+ D+GF  ++ +
Sbjct: 117 VGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKK 176

Query: 174 ILALLPRQRQNLLFSATFPPAIQALADATLRDPAVIDVQGEPGTEPNIVQRVIEVDAARR 233
           +LA LP +RQNLLFSATF   I  LA   L +P  I+V     T   I QRV  + A+ +
Sbjct: 177 VLARLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHK 236

Query: 234 TQLLRHLLKQHEGEWDRVLVFVATQHAAQTVAEKLYKNGIYAVPFHGDIAQGTRTDILAQ 293
             LL HL+    G W++VLVF  T+H A  +AE L K+G+ AV  HG+ +Q  RT  LA 
Sbjct: 237 RALLAHLITA--GAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALAD 294

Query: 294 FKQSRWDVVIATDLAARGIDIAQLPVVINYDLPRSPTDYIHRIGRTGRAGESGLAISFVS 353
           FK     +++ATD+AARG+DI QLP V+N++LP    DY+HRIGRTGRAG SG AIS V+
Sbjct: 295 FKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVA 354

Query: 354 AASEAHFRLIEKRQGLSLP-------------------RERVEGFEPTEVAPPVVDA-SG 393
              E   + IE+     +                    RER +   P     P  D  +G
Sbjct: 355 PDEEKLLKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDVRNPRNARGPRGDGPNG 414

Query: 394 TGGIKGKRPSKKDKLRAAAA 413
           +GG  G++   KDK +  +A
Sbjct: 415 SGGGGGRKDKGKDKGKEKSA 434