Pairwise Alignments

Query, 427 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

Subject, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  272 bits (696), Expect = 2e-77
 Identities = 152/363 (41%), Positives = 213/363 (58%), Gaps = 8/363 (2%)

Query: 3   FDSLGLAPALVHAAAESGYAAPTAIQAAAIPAILQGRDVRGSAQTGSGKTAAFSLPLLQR 62
           F  L L  A++ A  E G+ +PT IQAAAIP +L+GRD  G AQTG+GKTAAFSLPLL +
Sbjct: 28  FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87

Query: 63  LGAERPPGSTRRVRALVLVPTRELAAQVGETLRSLAQHLPERLKIVVAFGGVSINPQMMS 122
           L       S  + +A+V+ PTRELA QV   +++L Q++ + LK++  +GG SI  QM +
Sbjct: 88  LNL-----SQYKPQAIVMAPTRELAIQVAAEIKNLGQNI-KGLKVLEIYGGASILDQMRA 141

Query: 123 LRGGADIVVATPGRLLDLADHNALRLDAVATLVLDEADRLFDLGFAEELGRILALLPRQR 182
           L+ GA IVV TPGR+ DL   + L LD   T +LDEAD +  +GF +++  I+   P   
Sbjct: 142 LKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESA 201

Query: 183 QNLLFSATFPPAIQALADATLRDPAVIDVQGEPGTEPNIVQRVIEVDAARRTQLLRHLLK 242
           Q +LFSAT PP ++ + +  LR+P  +DV G   T   + Q+   V    + + +  LL+
Sbjct: 202 QRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLE 261

Query: 243 QHEGEWDRVLVFVATQHAAQTVAEKLYKNGIYAVPFHGDIAQGTRTDILAQFKQSRWDVV 302
               E D  +VFV T+   + +A+ L   G  A   HGDI Q  R   +   KQ   D++
Sbjct: 262 TE--ETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319

Query: 303 IATDLAARGIDIAQLPVVINYDLPRSPTDYIHRIGRTGRAGESGLAISFVSAASEAHFRL 362
           +ATD+ ARG+D+ ++  V NYD+P     YIHRIGRTGRAG  G AI  V        R 
Sbjct: 320 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379

Query: 363 IEK 365
           IE+
Sbjct: 380 IER 382