Pairwise Alignments

Query, 427 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

Subject, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  327 bits (837), Expect = 6e-94
 Identities = 195/423 (46%), Positives = 259/423 (61%), Gaps = 12/423 (2%)

Query: 3   FDSLGLAPALVHAAAESGYAAPTAIQAAAIPAILQGRDVRGSAQTGSGKTAAFSLPLLQR 62
           F  LGL   L++  +E G A PT IQ  AIP +LQG+DV   AQTG+GKTAAF LPL+QR
Sbjct: 8   FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67

Query: 63  LGAERP---PGSTRRVRALVLVPTRELAAQVGETLRSLAQHLPERLKIVVAFGGVSINPQ 119
              E+P     +++ +RALVLVPTRELA QV ++L++ A+     LKIV  +GG S+  Q
Sbjct: 68  F-IEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGT--ELKIVAVYGGTSMKVQ 124

Query: 120 MMSLRGGADIVVATPGRLLDLADHNALRLDAVATLVLDEADRLFDLGFAEELGRILALLP 179
           +  LRGG DI++ATPGRLLD A   +L L  V  LVLDEADR+ D+GF  +L R+L  L 
Sbjct: 125 LNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLS 184

Query: 180 RQRQNLLFSATFPPAIQALADATLRDPAVIDVQGEPGTEPNIVQRVIEVDAARRTQLLRH 239
             RQ L FSATF   I+A+A   +RDP  + V     T   + Q V  VD  R+ +LL +
Sbjct: 185 PLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSY 244

Query: 240 LLKQHEGEWDRVLVFVATQHAAQTVAEKLYKNGIYAVPFHGDIAQGTRTDILAQFKQSRW 299
           L+      W +VLVF  T+  +  +AE+L  +GI AV  +GD +QG R   L  FK  + 
Sbjct: 245 LIGSKN--WQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302

Query: 300 DVVIATDLAARGIDIAQLPVVINYDLPRSPTDYIHRIGRTGRAGESGLAISFVSAASEAH 359
             +IATD+AARG+DIAQL  V+NYD+P    DY+HRIGRTGRAG +GLA+S +S   +  
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362

Query: 360 FRLIEKRQGLSLPRERVEGFEPTEVAPPVVDASGTGGIKGKRPSKKDKLRAAAAKAAARE 419
              IE+     LP+E ++GFEP+    PVV    +      R S+K KL+A     A R 
Sbjct: 363 LEAIERLLNTRLPQEWLKGFEPS----PVVHEENSPRRSAGRSSEKRKLKAQLKIHAQRG 418

Query: 420 EVA 422
           + A
Sbjct: 419 KKA 421