Pairwise Alignments

Query, 427 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

Subject, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  313 bits (801), Expect = 8e-90
 Identities = 175/386 (45%), Positives = 236/386 (61%), Gaps = 5/386 (1%)

Query: 1   MPFDSLGLAPALVHAAAESGYAAPTAIQAAAIPAILQGRDVRGSAQTGSGKTAAFSLPLL 60
           M F  LGL+  LV   A+ GY  PT IQ  AIP ILQGRD+  +AQTG+GKTA+F LP+L
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  QRLGAERPPGSTRRVRALVLVPTRELAAQVGETLRSLAQHLPERLKIVVAFGGVSINPQM 120
           ++L  +      +RVRAL+LVPTRELA QV E +    +     LK +  FGGV    Q 
Sbjct: 61  EKL-RQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTG--LKSLAVFGGVDEQAQK 117

Query: 121 MSLRGGADIVVATPGRLLDLADHNALRLDAVATLVLDEADRLFDLGFAEELGRILALLPR 180
             L  G D++VATPGRL+DL    A+  + +  +VLDEADR+ D+GF E + +I+  LP 
Sbjct: 118 QRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPS 177

Query: 181 QRQNLLFSATFPPAIQALADATLRDPAVIDVQGEPGTEPNIVQRVIEVDAARRTQLLRHL 240
           + Q LLFSAT    ++ LA   +RDP  I +     ++ NI Q +I VD   ++ LL HL
Sbjct: 178 EVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHL 237

Query: 241 LKQHEGEWDRVLVFVATQHAAQTVAEKLYKNGIYAVPFHGDIAQGTRTDILAQFKQSRWD 300
           +  +E +WD+ L+F+ T+H A  +  +L K GI+A  FH   +Q  R  +L  FK  +  
Sbjct: 238 I--NEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIK 295

Query: 301 VVIATDLAARGIDIAQLPVVINYDLPRSPTDYIHRIGRTGRAGESGLAISFVSAASEAHF 360
            ++AT +AARGIDI QL  V+NYDLP    +Y+HRIGRTGRA   G AISFVS  +  + 
Sbjct: 296 YLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNL 355

Query: 361 RLIEKRQGLSLPRERVEGFEPTEVAP 386
            +IE R G  + R  VEGFEP +  P
Sbjct: 356 CMIESRLGHLIERRVVEGFEPKKPVP 381