Pairwise Alignments

Query, 427 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

Subject, 443 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

 Score =  344 bits (882), Expect = 4e-99
 Identities = 208/446 (46%), Positives = 256/446 (57%), Gaps = 31/446 (6%)

Query: 1   MPFDSLGLAPALVHAAAESGYAAPTAIQAAAIPAILQGRDVRGSAQTGSGKTAAFSLPLL 60
           M F  L L P L+ A    GY  PT +Q  AIPA+L G D+  +AQTG+GKTA+F+LPLL
Sbjct: 1   MTFADLDLVPPLLEALDVLGYQTPTPVQEKAIPAVLAGGDLMAAAQTGTGKTASFALPLL 60

Query: 61  QRLGAERPPGSTRRVRALVLVPTRELAAQVGETLRSLAQHLPERLKIVVAFGGVSINPQM 120
           QRL  +  P ++   RAL+LVPTRELA QV ++  +  Q L   L+    +GGVSINPQM
Sbjct: 61  QRLAHDPEPTASNSTRALILVPTRELAQQVCDSFVAYGQFLV--LRSYAVYGGVSINPQM 118

Query: 121 MSLRGGADIVVATPGRLLDLADHNALRLDAVATLVLDEADRLFDLGFAEELGRILALLPR 180
           M LR G DI+VATPGRLLDL   NA+R D V TLVLDEADR+ DLGFA EL  + ALLP+
Sbjct: 119 MKLRKGVDILVATPGRLLDLHRQNAVRFDQVRTLVLDEADRMLDLGFARELNALFALLPK 178

Query: 181 QRQNLLFSATFPPAIQALADATLRDPAVIDVQGEPGTEPNIVQRVIEVDAARRTQLLRHL 240
           QRQ LLFSATF  AI+++AD  L+ P  I+      T   I Q V+ VD  R++ L  HL
Sbjct: 179 QRQTLLFSATFSDAIRSMADQLLKKPLSIETARPNATARGIKQWVVPVDKKRKSALFCHL 238

Query: 241 LKQHEGEWDRVLVFVATQHAAQTVAEKLYKNGIYAVPFHGDIAQGTRTDILAQFKQSRWD 300
            K    +WD+VLVFV T+     + E L   GI A   HGD  Q  R   L  FK  +  
Sbjct: 239 YKHK--KWDQVLVFVKTRKGVDELVETLTAKGIAAESIHGDKPQPARLRALESFKAGQVR 296

Query: 301 VVIATDLAARGIDIAQLPVVINYDLPRSPTDYIHRIGRTGRAGESGLAISFVSAASEAHF 360
           V++ATD+A+RG+DI  LP V+N+DLP  P DY+HRIGRT RAG SG A+S V A      
Sbjct: 297 VLVATDVASRGLDIDDLPRVVNFDLPIVPEDYVHRIGRTARAGASGEAVSLVCADEVNLL 356

Query: 361 RLIEKRQGLSLPRERVEGFEPTEVAPPVVDAS-------------------GTGGIKGKR 401
             IE   G  L R    GFEP    P    A                    G+G  +GK 
Sbjct: 357 GAIEVLIGQPLSRIEQHGFEPDHRVPETGPAGQVIKKPKKPKMPKHLDYGIGSGPSRGKG 416

Query: 402 PSKKDKLRAAAAKAAAREEVAGKSGG 427
           P         +AKA      AG+ GG
Sbjct: 417 P--------GSAKAPGGRRGAGRPGG 434