Pairwise Alignments

Query, 427 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

Subject, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

 Score =  258 bits (660), Expect = 2e-73
 Identities = 147/375 (39%), Positives = 224/375 (59%), Gaps = 10/375 (2%)

Query: 3   FDSLGLAPALVHAAAESGYAAPTAIQAAAIPAILQG-RDVRGSAQTGSGKTAAFSLPLLQ 61
           F +LGL+  ++ A  + G+  PT IQ  AIP +++G RD+ G AQTG+GKTAAF +P+L+
Sbjct: 4   FKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPILE 63

Query: 62  RLGAERPPGSTRRVRALVLVPTRELAAQVGETLRSLAQHLPERLKIVVAFGGVSINPQMM 121
            +        +R  +AL+L PTRELA QV E + S+     +RL +   +GG SI+ Q+ 
Sbjct: 64  TIDEH-----SRNTQALILAPTRELAIQVAEEIDSIKGS--KRLNVFPVYGGQSIDRQIR 116

Query: 122 SLRGGADIVVATPGRLLDLADHNALRLDAVATLVLDEADRLFDLGFAEELGRILALLPRQ 181
            LR G  IVV TPGR+LD      ++L+ V+ +VLDEAD + ++GF +++  IL  +   
Sbjct: 117 ELRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTD 176

Query: 182 RQNLLFSATFPPAIQALADATLRDPAVIDVQGEPGTEPNIVQRVIEVDAARRTQLLRHLL 241
           ++ LLFSAT P +I  LA   +R+  +I V+ +  T     Q   E+ +  + +LL  ++
Sbjct: 177 KRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRII 236

Query: 242 KQHEGEWDRVLVFVATQHAAQTVAEKLYKNGIYAVPFHGDIAQGTRTDILAQFKQSRWDV 301
              +  +   L+F  T+     VA +L + G  A   HGD+ Q  R   L +FK  + +V
Sbjct: 237 DTEKEFYG--LIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINV 294

Query: 302 VIATDLAARGIDIAQLPVVINYDLPRSPTDYIHRIGRTGRAGESGLAISFVSAASEAHFR 361
           ++ATD+AARGIDI  L  V+N+D+P++P  Y+HRIGRTGRAG+ G AI+FV  +    F+
Sbjct: 295 LVATDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFK 354

Query: 362 LIEKRQGLSLPRERV 376
            I+K     + RE V
Sbjct: 355 YIQKIAKTEIKREEV 369