Pairwise Alignments

Query, 427 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

Subject, 475 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  331 bits (848), Expect = 3e-95
 Identities = 182/386 (47%), Positives = 239/386 (61%), Gaps = 5/386 (1%)

Query: 1   MPFDSLGLAPALVHAAAESGYAAPTAIQAAAIPAILQGRDVRGSAQTGSGKTAAFSLPLL 60
           MPF  LGL  ALV A  E GY +PT IQ  AIP+IL G++V  +AQTG+GKTA+F LPLL
Sbjct: 1   MPFSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60

Query: 61  QRLGAERPPGSTRRVRALVLVPTRELAAQVGETLRSLAQHLPERLKIVVAFGGVSINPQM 120
            R  A+ P    +RVR+++L PTRELA QV + +   A++LP  L  +  +GGV   PQ 
Sbjct: 61  HRF-ADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLP--LTAMAMYGGVDAAPQK 117

Query: 121 MSLRGGADIVVATPGRLLDLADHNALRLDAVATLVLDEADRLFDLGFAEELGRILALLPR 180
             L  G D++VATPGRLLD+    A+R D V+ LVLDEADR+ D+GF E++  I+  LP 
Sbjct: 118 KRLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPE 177

Query: 181 QRQNLLFSATFPPAIQALADATLRDPAVIDVQGEPGTEPNIVQRVIEVDAARRTQLLRHL 240
           QRQNLLFSAT    ++ALA   + D   I++  +      I Q +  VD  R++ LL HL
Sbjct: 178 QRQNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKSALLSHL 237

Query: 241 LKQHEGEWDRVLVFVATQHAAQTVAEKLYKNGIYAVPFHGDIAQGTRTDILAQFKQSRWD 300
           +K  E  W + L+F+ T+H A  +  +L K GI A  FH   +Q  R  +L  FK  +  
Sbjct: 238 IK--ENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVP 295

Query: 301 VVIATDLAARGIDIAQLPVVINYDLPRSPTDYIHRIGRTGRAGESGLAISFVSAASEAHF 360
            ++AT + +RGIDI  L  VINYDLP    DYIHRIGRTGRAG  G AISFVS     + 
Sbjct: 296 FLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNL 355

Query: 361 RLIEKRQGLSLPRERVEGFEPTEVAP 386
             IE+R G  + R+ +EGFEP +  P
Sbjct: 356 CAIERRLGHIIERKNIEGFEPKKAVP 381