Pairwise Alignments

Query, 427 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

Subject, 462 a.a., ATP-dependent RNA helicase RhlE (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  280 bits (717), Expect = 5e-80
 Identities = 174/420 (41%), Positives = 240/420 (57%), Gaps = 17/420 (4%)

Query: 1   MPFDSLGLAPALVHAAAESGYAAPTAIQAAAIPAILQGRDVRGSAQTGSGKTAAFSLPLL 60
           M F  L L+P L+ A    GY  PT +Q  AIP  L G DV   A TG+GKTAAF LP+L
Sbjct: 1   MTFADLSLSPRLLAALDGMGYRQPTPVQRGAIPPALAGEDVLALAATGTGKTAAFVLPML 60

Query: 61  QRLGAERPPGSTRRVRALVLVPTRELAAQVGETLRSLAQHLPERLKIVVAFGGVSINPQM 120
           QRL  + P G+   VRALV+ PTRELA Q  + +R L      RL+    +GGV +  Q 
Sbjct: 61  QRL-MDGPRGA---VRALVVAPTRELAEQTHDHVRRLGSM--SRLRSTTIYGGVGVVAQA 114

Query: 121 MSLRGGADIVVATPGRLLDLADHNALRLDAVATLVLDEADRLFDLGFAEELGRILALLPR 180
           + LR G ++VV  PGRLLD      L L ++  LVLDE D LFDLGF  ++  +L ++P 
Sbjct: 115 LRLRAGVEVVVGCPGRLLDHIRRGNLDLSSLEVLVLDEGDSLFDLGFLADVRMLLGMVPA 174

Query: 181 QRQNLLFSATFPPAIQALADATLRDPAVIDVQG-EPGTEPNIVQRVIEVDAARRTQLLRH 239
             Q +LFSAT P A++ LA   LR P  + V   +P +   +   +  V A  RT LL+ 
Sbjct: 175 TCQRMLFSATMPDAVRVLAAEALRQPVTVQVDAVQPAS--TVHHALYPVPAHLRTPLLKT 232

Query: 240 LLKQHEGEWDRVLVFVATQHAAQTVAEKLYKNGIYAVPFHGDIAQGTRTDILAQFKQSRW 299
            L+   G    V+VFV T+H A+ + ++L   G       G ++Q  R   L  F+  R+
Sbjct: 233 FLRS--GPEGSVVVFVRTRHGARRLWQQLDNVGFSVTCLQGKLSQRRRLAALEGFRDGRY 290

Query: 300 DVVIATDLAARGIDIAQLPVVINYDLPRSPTDYIHRIGRTGRAGESGLAISFVSAASEAH 359
           DV++ATD+AARG+DI+Q+  V+NYD+P +   YIHR+GRTGRA  +G A++FV+ A EA 
Sbjct: 291 DVLVATDVAARGLDISQVTHVVNYDVPSTADAYIHRVGRTGRAARNGTAMTFVTPADEAQ 350

Query: 360 FRLIEKRQGLSLPRERVEGFEPTEVAPPVVDASGTGGIKGKRPSKKDKLRAAAAKAAARE 419
            R IE+  G  +PRER+  F   +   PV    G  G +   P ++ +L A    AA +E
Sbjct: 351 VRNIERVLGTVIPRERLADF---DYGAPV---RGPEGARPAMPPRQPRLPAGKRPAAPQE 404