Pairwise Alignments

Query, 668 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 961 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  101 bits (252), Expect = 1e-25
 Identities = 88/299 (29%), Positives = 140/299 (46%), Gaps = 24/299 (8%)

Query: 378 RQAEMLLRAARGRALEDALRAERQLEDKVHERTQALGRSNAQLAAEIEGRRLAEASLQRA 437
           R  E     +RGR LE          D V  +   +  ++     +I+G +  EA L++ 
Sbjct: 544 RDGEYHWLLSRGRVLE---------RDPVSRKATLVAGTHV----DIDGLKRIEAELRQT 590

Query: 438 LASEREAMQQQRQFVSLVSHEFRTPLAVIDATAQSIALPGVEIQPR-----LAKIRRAVQ 492
           +   + A Q + +F+S +SHE RTPL  I   AQ + +   +++P      L +I RA +
Sbjct: 591 ILDAQVANQAKSRFISSMSHELRTPLNAIQGFAQLMRMK-QDVRPDGNADFLDEILRASR 649

Query: 493 RLTLLVVNCLADDRFHAEGAALKVERVDLRALVE---RLVQAFGPTDRARIRFSLPACEA 549
            L  LV + L       +  +++++ V++  L++    LV+A       ++   LP    
Sbjct: 650 HLNQLVGDILDWSGTQLQSTSVELQMVNVSKLMQESAELVRAEVAERGLQLNVDLPESTL 709

Query: 550 WTDGDAALLEIALHNLVQNAVHYSPAECDVRVSLALVEGGMARVDVEDFGSGIPPDEQAR 609
               D   L   L NL+ NA+ Y+     V +S   V  G  R+ VED G GI  D+Q R
Sbjct: 710 QVRADPRRLRQVLLNLLSNAIKYNKPAGQVTLSYQ-VAAGYIRLLVEDTGLGIASDQQNR 768

Query: 610 IFERFFR-GTSSRKASGTGLGLFLCSEIARAHGGSAVLLRSGPQGSVFRVEVPMSGARS 667
           +FE F R G  +    GTG+GL LC E+A    G   L      GS F +E+P+ G+ +
Sbjct: 769 VFEPFQRLGRENTMIQGTGIGLALCQELAALMRGRMGLHSEPGIGSSFWIELPLLGSEA 827