Pairwise Alignments

Query, 342 a.a., ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose) from Variovorax sp. SCN45

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  192 bits (489), Expect = 8e-54
 Identities = 111/300 (37%), Positives = 170/300 (56%), Gaps = 2/300 (0%)

Query: 36  EMGLLLIIAALCVGMSFASPYFLTWDNVRAMLLSFSIEGIVVVGMTILLIVGGIDLSVGS 95
           E   L+ +  L V +SF +P F T DN+  +L   S+  I+ VGMT++++  GIDLSVGS
Sbjct: 31  EQKSLIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVGMTLVILTAGIDLSVGS 90

Query: 96  VVCFAMVVTGKLFLMGFDPWTAGLVAIGASALIGAMIGGCVTRIGLNHFIASLAFMVIVR 155
           V+         L  M      A   A+ A A +GA+ G  + +  +  FIA+L  M ++R
Sbjct: 91  VLALCGAFAATLVAMEVPVLVAVPTALLAGAALGAISGIIIAKGKVQAFIATLVTMTLLR 150

Query: 156 GLCLALTQGTPQSL-FSLPAE-FKFIGQGTLFGIPAVILIFLLIVVVSDFVLRRSTLLRR 213
           G+ +  T G P S  F+  A+ F + G G   GIP  + + +++   + ++L  +   R 
Sbjct: 151 GVTMVYTDGRPISTGFTDTADTFAWFGTGYTLGIPVPVWLMVVVFAGAWYLLNHTRFGRY 210

Query: 214 VFYTGSNEKAALYSGIRVGHVKFWVTVLCSASAGLAGVIYTARFGAATPTFGMGMELNVI 273
           V+  G NE A   SGI V  VK  V  +C   A LAG+I T+R  +A PT GMG EL+ I
Sbjct: 211 VYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPTAGMGYELDAI 270

Query: 274 AAAVIGGASLKGGSGTVLGAVLGLALLSVVTSSLILLDVSPYWQDVIKGLILLAAVTIDH 333
           AA V+GG SL GG G ++G ++G  ++  + ++L LLDVS Y+Q + K +++L AV +D+
Sbjct: 271 AAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKAVVILLAVLVDN 330