Pairwise Alignments

Query, 342 a.a., ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose) from Variovorax sp. SCN45

Subject, 332 a.a., sugar uptake ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  186 bits (473), Expect = 6e-52
 Identities = 109/305 (35%), Positives = 172/305 (56%), Gaps = 2/305 (0%)

Query: 39  LLLIIAALCVGMSFASPYFLTWDNVRAMLLSFSIEGIVVVGMTILLIVGGIDLSVGSVVC 98
           +L+ +   C+ +S A+  F T  N+  +  +F+   I+ +GMT+++I GGIDLSVGSV+C
Sbjct: 28  VLVAVILACLFLSIATDSFATAKNLYNITRNFTFVAIIALGMTLVIITGGIDLSVGSVLC 87

Query: 99  FAMVVTGKLFLMGFDPWTAGLVAIGASALIGAMIGGCVTRIGLNHFIASLAFMVIVRGLC 158
              +V   +   G+        +IG + + GA  G  +  +G   F+ +L  + I R L 
Sbjct: 88  LCSMVLAVVMHAGYGIEVGIAASIGTALVAGAFNGVMIAYLGFPPFVITLGMLSIARSLA 147

Query: 159 LALTQGTPQSLFSLPAEFKF-IGQGTLF-GIPAVILIFLLIVVVSDFVLRRSTLLRRVFY 216
           +  +  T    F    +    +G G  F GI   +L  +++ +++ FVLR +   R VF 
Sbjct: 148 MVASNNTVVFEFGPDHDTLLALGGGAWFLGIANPVLYMIVLALLTGFVLRWTKFGRYVFA 207

Query: 217 TGSNEKAALYSGIRVGHVKFWVTVLCSASAGLAGVIYTARFGAATPTFGMGMELNVIAAA 276
            G NE AA  +G+ V  +K  V ++ + +AG+AG+I T   GA T   G GMEL VIAAA
Sbjct: 208 IGGNEHAATLTGVPVRRIKVAVYMISALAAGIAGIIQTGWLGAVTTNIGAGMELQVIAAA 267

Query: 277 VIGGASLKGGSGTVLGAVLGLALLSVVTSSLILLDVSPYWQDVIKGLILLAAVTIDHIMN 336
           VIGGA+L GG+GT  GA++G AL+ V+ +SL LL ++ +WQ    G  ++ AV  D I N
Sbjct: 268 VIGGANLAGGAGTASGALIGAALIEVIRNSLGLLGINAFWQGAFIGGAIVLAVLFDRIRN 327

Query: 337 TRKTK 341
            R+++
Sbjct: 328 FRQSE 332