Pairwise Alignments

Query, 348 a.a., ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose) from Variovorax sp. SCN45

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score = 64.3 bits (155), Expect = 4e-15
 Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 3/205 (1%)

Query: 83  DVNKQLASFEQELARKPAGILLHPMNPDPFIEPINRAAAMGIPVVTFAADSPNSKRTSFI 142
           D +K+L++ E    R    IL++P + D     I  A    IPV+T    +   +  S I
Sbjct: 67  DPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGEVVSHI 126

Query: 143 TSDNDREGTQAADAIAASMGGKGEYAVLEN-PGQDNHDRRIAAFINRMKTKHPGMKLVGR 201
            SDN   G  A   I A +G   +   LE   G      R   F+N +K     M+L+  
Sbjct: 127 ASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVKGSK--MQLLAS 184

Query: 202 AASNQDPNKAYQAVLSLAQANPNLGALFMPEANSALGAAQAKVETKKNIKVMCCDVNAKI 261
             ++ D  K    + +L  ANP++ A+F      ALGA +A   + K++ ++  D     
Sbjct: 185 QPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGKSVMIVGFDGTDDG 244

Query: 262 LDMIKSGDVFGSINPNQGMQGYMGM 286
           +  ++ G +  ++     M G +G+
Sbjct: 245 IAAVERGQLAATVAQQPDMIGAIGI 269