Pairwise Alignments
Query, 1032 a.a., Excinuclease ABC subunit A from Variovorax sp. SCN45
Subject, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056
Score = 1252 bits (3240), Expect = 0.0
Identities = 625/995 (62%), Positives = 765/995 (76%), Gaps = 59/995 (5%)
Query: 39 RISIRGARTHNLKNVDLDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 98
+I +RGARTHNLKN++L IPR+KL+VITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR
Sbjct: 3 KIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62
Query: 99 QFLQLMDKPDVDVIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCPD 158
QFL LM+KPDVD IEGLSPAISIEQK+TSHNPRSTVGT+TE++DYLRLLYAR G P CP+
Sbjct: 63 QFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPE 122
Query: 159 HHLPLQAQTVSQMVDAVLAIPDEPRLMILAPVAREKKGEFVELFAEMQAAGYVRFRVDGQ 218
H +PL+AQT+SQMVD VL +P+ ++M+LA + +E+KGE V+ + A G++R R+DG+
Sbjct: 123 HQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDGE 182
Query: 219 TYEYNDLPKLKKTEKHDIDIVIDRLRARPDMQQRLAESFEAALRMAEGRAIALELGAEGA 278
T + D PKL+ +KH I++++DR + R D+QQRLAESFE AL ++ G + + +G
Sbjct: 183 TCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPMEGDG- 241
Query: 279 PDKEHLFNAKFACPICHYSLSELEPRLFSFNSPVGACPSCDGLGHREVFDPARVVAFPSL 338
+E +F+A FACP C YS+ ELEPRLFSFN+P GACP+CDGLG ++ FDP RV+ +L
Sbjct: 242 --EEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDANL 299
Query: 339 SLASGAIKGWDRRNGYYFSMIESVAKHYKFDVDAPFESLPASVQQVLLHGSAAEEIKFNY 398
SLA GAI+GWD++N YYF M+ ++A+HY FDV PF L +Q+++LHGS EI+F Y
Sbjct: 300 SLAQGAIRGWDQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEFKY 359
Query: 399 TMESGNFAGKKLTKKHPFEGIIPNMARRYRETDSVMVREDLARFRNLQPCPDCGGSRLRR 458
+ G+ KKHPFEGI+ N+ RRYR+T+S VRE+LA++ + +PC C G+RL+
Sbjct: 360 INDRGDIR----LKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKI 415
Query: 459 EARNVFLVDESARPADGGEPPRMAIFELSHLTLRDSLAWFQTLKLRGAKADIADKVVREI 518
EARNVF+ D A+ + L++ D+L +FQ LKL G +A IA+KV++EI
Sbjct: 416 EARNVFIND-------------TALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEI 462
Query: 519 GLRLKFLNDVGLNYLSLDRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRD 578
RL+FL +VGLNYL+L RSAETLSGGEAQRIRLASQIG+GL GVMYVLDEPSIGLHQRD
Sbjct: 463 NDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRD 522
Query: 579 NDRLIGTLKHLRDIGNSVIVVEHDEDMIHAADHVIDMGPGAGVHGGRVMAQGTYAEVSAN 638
N+RL+ TL HLR++GN+V+VVEHDED I ADHVID+GPGAGVHGG V+A+G E+ AN
Sbjct: 523 NERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIAN 582
Query: 639 PDSLTGQYLSGTRKIEVPRHRTAWLPVVSKPAFNEGKKPSRFPQSPAAERRAAREAAHLA 698
P+SLTGQYLSG +KI VP RT + KK
Sbjct: 583 PNSLTGQYLSGVKKIAVPEQRTP----------KDAKK---------------------- 610
Query: 699 TQTDLQEIRVVGATGNNLKNVSVAFPVGLLTCVTGVSGSGKSTLVNDTLYTAVARTLYRA 758
+ + GA GNNLKNV ++ PVGL TCVTGVSGSGKSTL+NDT + L A
Sbjct: 611 ------TVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGA 664
Query: 759 -HEEPAAHESVEGIEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELMAETNTARERG 817
PA + S++G+E+FDKVI++DQSPIGRTPRSNPATYTG+FTPIREL A T +R RG
Sbjct: 665 TTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSRG 724
Query: 818 YGPGRFSFNVAGGRCEACQGDGVVKVEMHFLPDVYVPCEVCHGQRYNRETLEVLYKGKNI 877
Y PGRFSFNV GGRCEACQGDGV+KVEMHFLPDVYVPC+VC G+RYNRETLEV YKGK I
Sbjct: 725 YQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYKGKTI 784
Query: 878 AQILEMTVETAHEFLKAVPTIERKLRTLLDVGLSYIKLGQSATTLSGGEAQRVKLALELS 937
++L+MTVE A EF VP I RKL+TL+DVGLSYI+LGQSATTLSGGEAQRVKLA ELS
Sbjct: 785 DEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELS 844
Query: 938 KRDTGRTLYILDEPTTGLHFADIELLLKVLHQLRDAGNTIVVIEHNLDVIKTADWLIDMG 997
KRDTG+TLYILDEPTTGLHF DI+ LL VLH+LRD GNT+VVIEHNLDVIKTADW+ID+G
Sbjct: 845 KRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWIIDLG 904
Query: 998 PEGGAGGGTVVGEGTPEDIAANEASHTGRYLKRLL 1032
PEGG GGG ++ EGTPED+A EASHT R+LK LL
Sbjct: 905 PEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
Score = 63.5 bits (153), Expect = 7e-14
Identities = 42/123 (34%), Positives = 60/123 (48%), Gaps = 15/123 (12%)
Query: 703 LQEIRVVGATGNNLKNVSVAFPVGLLTCVTGVSGSGKSTLVNDTLY-----------TAV 751
+ +I V GA +NLKN+++ P L +TG+SGSGKS+L DTLY +A
Sbjct: 1 MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
Query: 752 ARTLYRAHEEPAAHESVEGIEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELMAETN 811
AR E+P V+ IE I+++Q PRS T T ++ +R L A
Sbjct: 61 ARQFLSLMEKP----DVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVG 116
Query: 812 TAR 814
R
Sbjct: 117 EPR 119
Score = 59.3 bits (142), Expect = 1e-12
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 36 AQQRISIRGARTHNLKNVDLDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSA 95
A++ + ++GA +NLKNVDL IP +TG+SGSGKS+L DT + + +A
Sbjct: 608 AKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTA 667
Query: 96 YARQFLQLMDKPDVDVIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYA 149
+ + +E I I+Q PRS T T I +R L+A
Sbjct: 668 TPAPYRSIQG------LEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFA 715