Pairwise Alignments

Query, 1032 a.a., Excinuclease ABC subunit A from Variovorax sp. SCN45

Subject, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis S2

 Score =  967 bits (2500), Expect = 0.0
 Identities = 516/1006 (51%), Positives = 680/1006 (67%), Gaps = 74/1006 (7%)

Query: 40   ISIRGARTHNLKNVDLDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 99
            I I+GAR HNLKN+ L +PRN L+V+TG+SGSGKS++AFDT+YAEGQRRYVESLSAYARQ
Sbjct: 4    IIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYARQ 63

Query: 100  FLQLMDKPDVDVIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCPDH 159
            FL LM+KPDVD IEGLSPAI+I+QK TS NPRSTVGTVTEI+DYLRLLYAR G PYCP+H
Sbjct: 64   FLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYCPEH 123

Query: 160  HLPLQAQTVSQMVDAVLAIPDEPRLMILAPVAREKKGEFVELFAEMQAAGYVRFRVDGQT 219
            ++ +++Q+  ++ + +     E  + IL+P+ R+KKG + +LF ++ + G+ R RV+G+ 
Sbjct: 124  NIRIESQSPEKIAEKIEEEFSET-VTILSPIVRQKKGTYQKLFKDLNSEGFARIRVNGEI 182

Query: 220  YEYNDLPKLKKTEKHDIDIVIDRLRARPDMQQRLAESFEAALRMAEGRAIALELGAEGAP 279
            Y  +D   L++ +KHDI+IVIDRL  + D   RL E+ E AL  + G  I    G +   
Sbjct: 183  YRTDDEITLERYKKHDIEIVIDRLTPKDD-HSRLVEACERALERSGGLLIVT--GTKNNE 239

Query: 280  DKEHLFNAKFACPICHYSLSELEPRLFSFNSPVGACPSCDGLGHREVFDPARVVAFPSLS 339
            + E ++++  ACPIC  S  EL+PR+FSFNSP GAC  C GLG +  FD   ++   +  
Sbjct: 240  EIEKIYSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLGIKMEFDADLIIPDKNKC 299

Query: 340  LASGAIKGWDR-RNGYYFSMIESVAKHYKFDVDAPFESLPASVQQVLLHGSAAEEIKFNY 398
            +A GA+  +    +GY    + +VA H+ F V  P + L      +L++GS  E+I F  
Sbjct: 300  IADGAVALYRNFLDGYRSQHLAAVANHFGFTVLTPIKDLSKEQLDILMYGSP-EKIHFKV 358

Query: 399  TMESGNFAGKKLTKKHPFEGIIPNMARRYRETDSVMVREDLARFRNLQPCPDCGGSRLRR 458
            +  SG+    + ++  P+EG+IP   R Y ET S   R++L +F  +  CP CGG RL+ 
Sbjct: 359  SNGSGD---TEWSQNKPWEGLIPQSIRLYNETKSEYRRKELEKFMKVSLCPKCGGKRLKD 415

Query: 459  EARNVFLVDESARPADGGEPPRMAIFELSHLTLRDSLAWFQTLKLRGAKADIADKVVREI 518
            +A  V + D+S             I +L+ L++  +  +F  LKL   + +IA +V++EI
Sbjct: 416  KALAVKIEDKS-------------IIDLTDLSISKAEEFFNNLKLTDKEYEIAKQVIKEI 462

Query: 519  GLRLKFLNDVGLNYLSLDRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRD 578
              RLKFLNDVGL YL+L R + TLSGGEAQRIRLA+QIGS LTGV+YVLDEPSIGLHQRD
Sbjct: 463  KSRLKFLNDVGLGYLTLSRRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRD 522

Query: 579  NDRLIGTLKHLRDIGNSVIVVEHDEDMIHAADHVIDMGPGAGVHGGRVMAQGTYAEVSAN 638
            N +LI TL  LR++ N+++VVEHDED I  AD+V+DMGPGAGVHGG V+A GT  E+S N
Sbjct: 523  NQKLIETLHKLRNLDNTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPMEISKN 582

Query: 639  PDSLTGQYLSGTRKIEVPRHRTAWLPVVSKPAFNEGKKPSRFPQSPAAERRAAREAAHLA 698
             DSLTG+YLSG  KIE+P++R               +K  +F                  
Sbjct: 583  KDSLTGKYLSGELKIEIPKNR---------------RKSDKF------------------ 609

Query: 699  TQTDLQEIRVVGATGNNLKNVSVAFPVGLLTCVTGVSGSGKSTLVNDTLYTAVARTLY-- 756
                   +++     NNLK+VSV  P G+   +TGVSGSGKSTL+ + LY A+   +   
Sbjct: 610  -------LKLSNCRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENLYPALKEKIKSD 662

Query: 757  ----------RAHEEPAAHESVEGIEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIREL 806
                      + +E      ++E     DKV+ +DQSPIGRTPRSNPATYT +F  IR++
Sbjct: 663  ESVGELDFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATYTKVFDKIRQV 722

Query: 807  MAETNTARERGYGPGRFSFNVAGGRCEACQGDGVVKVEMHFLPDVYVPCEVCHGQRYNRE 866
             AET  A+ +GYGPGRFSFNV GGRCE CQGDGV+K+EM+FLPDV+V CE C G RYN E
Sbjct: 723  FAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVECEECKGARYNHE 782

Query: 867  TLEVLYKGKNIAQILEMTVETAHEFLKAVPTIERKLRTLLDVGLSYIKLGQSATTLSGGE 926
            TLEV YKGK+I+ +L M+VE A E  K +P I  KL+TL DVGL YIKLGQS+TTLSGGE
Sbjct: 783  TLEVKYKGKSISDVLNMSVEEAREHFKNIPQISNKLKTLCDVGLGYIKLGQSSTTLSGGE 842

Query: 927  AQRVKLALELSKRDTGRTLYILDEPTTGLHFADIELLLKVLHQLRDAGNTIVVIEHNLDV 986
            AQR+KL  ELSKR TG T+Y+LDEPTTGLHF D++ L+ VL+ L + GNT+VVIEHNLDV
Sbjct: 843  AQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLIDVLNSLVEKGNTVVVIEHNLDV 902

Query: 987  IKTADWLIDMGPEGGAGGGTVVGEGTPEDIAANEASHTGRYLKRLL 1032
            IK AD +ID+GPEGG  GG ++  GTPE+IA  + SHTG++LK +L
Sbjct: 903  IKCADHIIDLGPEGGEFGGEIIATGTPEEIAKCKLSHTGKFLKNIL 948



 Score = 62.4 bits (150), Expect = 1e-13
 Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 15/117 (12%)

Query: 703 LQEIRVVGATGNNLKNVSVAFPVGLLTCVTGVSGSGKSTLVNDTLY-----------TAV 751
           +++I + GA  +NLKN+S+  P   L  VTGVSGSGKST+  DT+Y           +A 
Sbjct: 1   MKDIIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAY 60

Query: 752 ARTLYRAHEEPAAHESVEGIEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELMA 808
           AR       +P     V+ IE     I + Q    + PRS   T T ++  +R L A
Sbjct: 61  ARQFLGLMNKP----DVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYA 113