Pairwise Alignments

Query, 1032 a.a., Excinuclease ABC subunit A from Variovorax sp. SCN45

Subject, 941 a.a., excinuclease ABC subunit A from Klebsiella michiganensis M5al

 Score = 1250 bits (3234), Expect = 0.0
 Identities = 628/995 (63%), Positives = 777/995 (78%), Gaps = 58/995 (5%)

Query: 39   RISIRGARTHNLKNVDLDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 98
            +I +RGARTHNLKN++L IPR+KL+V+TGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR
Sbjct: 3    KIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62

Query: 99   QFLQLMDKPDVDVIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCPD 158
            QFL LM+KPDVD IEGLSPAISIEQK+TSHNPRSTVGT+TEIHDYLRLLYAR G P CPD
Sbjct: 63   QFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLYARVGEPRCPD 122

Query: 159  HHLPLQAQTVSQMVDAVLAIPDEPRLMILAPVAREKKGEFVELFAEMQAAGYVRFRVDGQ 218
            H +PL AQTVSQMVD VL+ P+  RLM+LAP+ +E+KGE  +    +   GY+R R+DG+
Sbjct: 123  HDVPLAAQTVSQMVDNVLSQPEGQRLMLLAPIIKERKGEHNKTLENLAGQGYIRARIDGE 182

Query: 219  TYEYNDLPKLKKTEKHDIDIVIDRLRARPDMQQRLAESFEAALRMAEGRAIALELGAEGA 278
              + +D PKL+  +KH I++VIDR + R D+  RLAESFE AL ++ G AI   +    A
Sbjct: 183  VCDLSDPPKLELQKKHTIEVVIDRFKVRDDLSTRLAESFETALELSGGTAIVANMDDPKA 242

Query: 279  PDKEHLFNAKFACPICHYSLSELEPRLFSFNSPVGACPSCDGLGHREVFDPARVVAFPSL 338
              +E LF+A FACPIC YS+ ELEPRLFSFN+P GACP+CDGLG ++ FDP RV+  P L
Sbjct: 243  --EELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPERVIQNPEL 300

Query: 339  SLASGAIKGWDRRNGYYFSMIESVAKHYKFDVDAPFESLPASVQQVLLHGSAAEEIKFNY 398
            SLA GAI+GWDRRN YYF M++S+A+HY+FDV+AP+ +L +SVQ+V+L+GS  E I+F Y
Sbjct: 301  SLAGGAIRGWDRRNFYYFQMLKSLAEHYEFDVEAPWGTLNSSVQKVVLYGSGKENIEFKY 360

Query: 399  TMESGNFAGKKLTKKHPFEGIIPNMARRYRETDSVMVREDLARFRNLQPCPDCGGSRLRR 458
              + G+ +     ++HPFEG++ NM RRY+ET+S  VRE+LA+F + +PC  C G+RL+R
Sbjct: 361  MNDRGDTS----VRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCTSCEGTRLKR 416

Query: 459  EARNVFLVDESARPADGGEPPRMAIFELSHLTLRDSLAWFQTLKLRGAKADIADKVVREI 518
            EAR+VF V+ +  P             +S +++  ++ +F  LKL G +A IA+KV++EI
Sbjct: 417  EARHVF-VENTPLPT------------ISDMSIGHAMDFFNNLKLSGQRAQIAEKVLKEI 463

Query: 519  GLRLKFLNDVGLNYLSLDRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRD 578
            G RLKFL +VGLNYL+L RSAETLSGGEAQRIRLASQIG+GL GVMYVLDEPSIGLHQRD
Sbjct: 464  GDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRD 523

Query: 579  NDRLIGTLKHLRDIGNSVIVVEHDEDMIHAADHVIDMGPGAGVHGGRVMAQGTYAEVSAN 638
            N+RL+GTL HLR++GN+VIVVEHDED I AADHVID+GPGAGVHGG+V+A+G   ++ A 
Sbjct: 524  NERLLGTLIHLRNLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGQVVAEGKLEDIMAV 583

Query: 639  PDSLTGQYLSGTRKIEVPRHRTAWLPVVSKPAFNEGKKPSRFPQSPAAERRAAREAAHLA 698
            P+SLTGQ++SG RKIEVP+ R                     P +P              
Sbjct: 584  PESLTGQFMSGKRKIEVPKQRV--------------------PANPE------------- 610

Query: 699  TQTDLQEIRVVGATGNNLKNVSVAFPVGLLTCVTGVSGSGKSTLVNDTLYTAVARTLYRA 758
                 + +++ GA GNNLK+V++  PVGL TC+TGVSGSGKSTL+NDTL+    R L  A
Sbjct: 611  -----KVLKLSGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGA 665

Query: 759  H-EEPAAHESVEGIEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELMAETNTARERG 817
               EPA +  V+G+E+FDKVI++DQSPIGRTPRSNPATYTG+FTP+REL A    +R RG
Sbjct: 666  TIAEPAPYRDVQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPESRSRG 725

Query: 818  YGPGRFSFNVAGGRCEACQGDGVVKVEMHFLPDVYVPCEVCHGQRYNRETLEVLYKGKNI 877
            Y PGRFSFNV GGRCEACQGDGV+KVEMHFLPD+YVPC+ C G+RYNRETLE+ YKGK I
Sbjct: 726  YTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTI 785

Query: 878  AQILEMTVETAHEFLKAVPTIERKLRTLLDVGLSYIKLGQSATTLSGGEAQRVKLALELS 937
             ++L+MT+E A EF  AVP + RKL+TL+DVGL+YI+LGQSATTLSGGEAQRVKLA ELS
Sbjct: 786  HEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELS 845

Query: 938  KRDTGRTLYILDEPTTGLHFADIELLLKVLHQLRDAGNTIVVIEHNLDVIKTADWLIDMG 997
            KR TG+TLYILDEPTTGLHFADI+ LL+VLHQLRD GNTIVVIEHNLDVIKTADW++D+G
Sbjct: 846  KRGTGQTLYILDEPTTGLHFADIQQLLEVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLG 905

Query: 998  PEGGAGGGTVVGEGTPEDIAANEASHTGRYLKRLL 1032
            PEGG+GGG ++  GTPE +A  EAS+T R+LK +L
Sbjct: 906  PEGGSGGGEILVSGTPETVAECEASYTARFLKPML 940



 Score = 62.8 bits (151), Expect = 1e-13
 Identities = 43/123 (34%), Positives = 59/123 (47%), Gaps = 15/123 (12%)

Query: 703 LQEIRVVGATGNNLKNVSVAFPVGLLTCVTGVSGSGKSTLVNDTLY-----------TAV 751
           + +I V GA  +NLKN+++  P   L  VTG+SGSGKS+L  DTLY           +A 
Sbjct: 1   MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 752 ARTLYRAHEEPAAHESVEGIEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELMAETN 811
           AR      E+P     V+ IE     I+++Q      PRS   T T +   +R L A   
Sbjct: 61  ARQFLSLMEKP----DVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLYARVG 116

Query: 812 TAR 814
             R
Sbjct: 117 EPR 119