Pairwise Alignments

Query, 524 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 540 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  249 bits (636), Expect = 2e-70
 Identities = 161/519 (31%), Positives = 271/519 (52%), Gaps = 10/519 (1%)

Query: 5   ICAAVAGIFLSLS---AWAATPKDTLVVVKNIDDIVSLDPAEAFEFSSGEVVTNIYERLV 61
           +C AVA   + +    A   TP D LVV  ++ +++SLDPA A      EV  N+Y+ L+
Sbjct: 12  LCVAVALYAVQVPVSLAQGETPPDQLVVGMSMINLLSLDPAAATGLEVAEVNANVYDMLL 71

Query: 62  QYDAKDPTLLKPGLASAWKPAADGKSIEFTLRKGAAFESGNPVRPDDVVFSFKRVLKLNK 121
           + DA  P  L P LA  W  + D   + F LR    F SG P+   DV +S +RV+ LN+
Sbjct: 72  EQDAAQPDTLIPALAKTWDISPDRMRLTFQLRDDVRFHSGAPLTAQDVAWSLQRVVTLNR 131

Query: 122 APAFILSQLGWTADNIDQMARKGAAPDTLVLGWSGDFGPAYVLSVLAARPGA-IVDEKLV 180
           A A      G+TADN+ ++ R    P T V+       P  VL+ LA  P A I+D  + 
Sbjct: 132 ALASTWKAYGFTADNVVKLMR-AEGPHTFVMELPRVTDPMLVLNTLATSPSAFIIDRSVA 190

Query: 181 LANEKAGDLGNQWLNRNSAGSGPYKLKLYKPKEVLLLEANKKA-ANPPKTGNVLIKSVAE 239
           L ++   D G  WL  ++AGSG +KL +++  +V+L+  N        K   V+++++ E
Sbjct: 191 LQHQVGDDQGAAWLATHTAGSGAFKLDIWRANDVILMSRNDDYWRGAAKLRRVIMRNMTE 250

Query: 240 SATQRLLIESGDADIARDLASDQLDALKTRTDVRIEEFPAAAVHFIALNLKNEKLRNPAI 299
           S   RL++E GD D+AR +A+  + AL    +VRI+      ++++A++++    ++  +
Sbjct: 251 SQALRLMVERGDLDVARGMAATDIKALGKVDEVRIQSIARGTLYYVAMSMQQPLFQDIRV 310

Query: 300 WEAMRYLVDYDGISTQLLKGQMRTHQAFLPVGFAGALTTNPYKADPERAKAILAKAG-IK 358
            +A+R L+DY GI+  ++      +Q  L +G    L    Y+ D   AK +LA AG   
Sbjct: 311 RQAIRLLIDYQGINDVVMPHYGVINQRPLQLGLPARLEDPGYRLDVAEAKRLLAAAGHAD 370

Query: 359 GLEIDMDLINAQRFMDMAQSMQATMAKAGIKLNLLPGTGAQVLTRYRARKHEAILLYWGP 418
           G ++ +  +    F+++A S+QAT+A+AGI+  ++ GTG Q+    R R+ + ++   G 
Sbjct: 371 GFKVTIRSLTDPPFINIATSLQATLAQAGIQATIITGTGNQIYGAMRDRQFDILVGRGGG 430

Query: 419 DF-FDPHSNAKSFAYNVDNSDSAYQST-TTWRNSWLVPELSARTMAALKEVDPVKRAAAY 476
                PHS+ ++  YN DN   A  S    WR S+  P+L+     A +E DP ++   Y
Sbjct: 431 GAERHPHSSLRALVYNPDNRTEAKLSNFQGWRTSFFDPQLNQLIEQAERERDPERQRQIY 490

Query: 477 QDLQREVQARSPFIITFQEQ-NRVALRSNVKGYVQGTVA 514
             +Q     ++  I+   +  + V + ++V+ Y+  T A
Sbjct: 491 ARIQTLYDQQAGAIMPVSQMVDEVVIHADVRNYIGHTAA 529