Pairwise Alignments

Query, 524 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 518 a.a., nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  109 bits (273), Expect = 2e-28
 Identities = 118/506 (23%), Positives = 219/506 (43%), Gaps = 28/506 (5%)

Query: 4   RICAAVAGIFLSLSAWAATPKDTLVVVKNIDDIVSLDPAEAFEFSSGEVVTNIYERLVQY 63
           ++  A+    LS  A AA      + V    D VS+DP E     + ++   +++ L+++
Sbjct: 7   KLALALIAAGLSFGAMAAD-----ITVAYDADPVSMDPHEQLSGGTLQLSHMVFDPLIRF 61

Query: 64  DAKDPTLLKPGLASAWKPAADGKSIEFTLRKGAAFESGNPVRPDDVVFSFKRVLKLNKAP 123
             K     +P LA +W+   D +++ FTLRKG  F SGN    DDVV++F R+ +     
Sbjct: 62  TQKME--FEPRLAESWQ-RVDNETMRFTLRKGVKFHSGNDFTADDVVWTFNRLKESADFK 118

Query: 124 AFILSQLGWTADNIDQMARKGAAPDTLVLGWSGDFGPAYVLSVLAA-RPGAIVDEKLVLA 182
                 +  T  +   +  K A    L+   +      Y+  + +    G   D K    
Sbjct: 119 GIFEPLVSLTKVDDYTIEIKTAGTYPLIENVA-----TYIFPMDSKFYTGTTADGKNKAE 173

Query: 183 NEKAGDLGNQWLNRNSAGSGPYKLKLYKPKEVLLLEANKKAANPPKTGNV---LIKSVAE 239
             K G   N + + N +G+GP+ +   +    L  + N    +    GNV    +  + E
Sbjct: 174 IVKHG---NSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDKASKGNVDKLTLAVIKE 230

Query: 240 SATQRLLIESGDADIARDLASDQLDALKTRTDVRIEEFPAAAVHFIALNLK-NEKLRNPA 298
            AT+   + SG  D+   ++ +    +K    V +   P   V    +N   N  L++  
Sbjct: 231 DATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVITFQMNQNSNPALKDVR 290

Query: 299 IWEAMRYLVDYDGISTQLLKGQMRTHQAFLPVGFAGALTTNPYKADPERAKAILAKAGI- 357
           + +A+ Y ++ +GI  +++KG   T     PVG+AG       + D  +AK ++ +AG  
Sbjct: 291 VRQAIVYAINNEGIVDKVMKGAATTAAQQSPVGYAGYNENLKPRFDLNKAKELMKEAGYE 350

Query: 358 KGLEIDMDLINAQRFMD--MAQSMQATMAKAGIKLNLLPGTGAQVLTRYRARKHEAILLY 415
           KG  + M   N +   D  +AQ+  A ++K GIK++L     AQ    +     + +++ 
Sbjct: 351 KGFNLTMIAPNNRYVNDEKIAQAASAMLSKIGIKVDLKTMPKAQYWPEFDKCAADMLMIG 410

Query: 416 WGPDFFDPHSNAKSFAYNVDNSDSAYQSTTTWRNSWLVPELSARTMAALKEVDPVKRAAA 475
           W PD  D  +  +      D++    Q    + ++    E+     AA +E D  KR+  
Sbjct: 411 WHPDTEDSANFTEFLTMTRDSNTGKGQYNCGYYSN---AEVDKLVNAANEETDLEKRSTM 467

Query: 476 YQDLQREVQARSPFI-ITFQEQNRVA 500
            + ++  +   + F+ + FQ+ +  A
Sbjct: 468 LKKVEEILYNEAAFVPLHFQDPSWAA 493