Pairwise Alignments

Query, 282 a.a., Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) from Variovorax sp. SCN45

Subject, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  203 bits (517), Expect = 6e-57
 Identities = 116/259 (44%), Positives = 167/259 (64%), Gaps = 5/259 (1%)

Query: 4   LLIEDLTVTYPTASGPVDVVKSLS--LRMGAERIGIVGESGSGKSMTARAILGLVRSPGR 61
           L + +L+V++ T  G VD VK++S  +R G E + IVGESGSGKS++  A++ L+    R
Sbjct: 7   LQVRNLSVSFTTNDGVVDAVKNVSFDIRPG-ETLAIVGESGSGKSVSTNALMQLLPKNAR 65

Query: 62  A-TASRMAYDGADLLRQTPSGWRAIRGRRIGMVLQDPKFSLNPVLRVGRQIAEAGLLHGV 120
               S + ++G +LL +T +  R IRG RIGM+ Q+P  SLNP +RVG Q+AEA   H  
Sbjct: 66  IHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAEAIRCHRN 125

Query: 121 FKPAQARDRVLEMLRTVGVDNPERVHDAYPHQLSGGIGQRVMIAAMMIAEPGLLIADEPT 180
               QA+ RVLE+ + V + +P+  +  +PH+ SGG  QR+MIA  +I EP +LIADEPT
Sbjct: 126 VSQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPDILIADEPT 185

Query: 181 SALDVMVRGQVLEMMDREIRKRGMGLLMISHDLKMVAHFCDRVLVMYRGQVVESCAAKDL 240
           +ALDV V+ +VL ++       GM +L I+HDL +V    DRVLVM +G VVE  + + L
Sbjct: 186 TALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVVEQGSTEQL 245

Query: 241 F-RSQHPYTRGLLNCMPTG 258
           F + +H YTR L+N +P G
Sbjct: 246 FLQPEHDYTRMLINSIPKG 264



 Score =  148 bits (374), Expect = 2e-40
 Identities = 98/238 (41%), Positives = 138/238 (57%), Gaps = 17/238 (7%)

Query: 21  DVVKSLSLRMG-AERIGIVGESGSGKSMTARAILGLVRSPGRATASRMAYDGADLLRQTP 79
           + VK +SL +   E +GIVGESGSGKS   RA++GL+ S G+     +A+ G D  R   
Sbjct: 301 EAVKGISLELKQGETLGIVGESGSGKSTLGRALIGLLPSTGQ-----IAFKGQDF-RALS 354

Query: 80  SGWRAIRGRRIGMVLQDPKFSLNPVLRVGRQIAEAGLLH----GVFKPAQARDRVLEMLR 135
              R    + I MV QDP  SL+P + VG  I E  L+H       +  Q   R LE +R
Sbjct: 355 EKQRLALKKDIQMVFQDPYGSLSPRMTVGEIITEGLLVHQPHISKLERMQRARRALEEVR 414

Query: 136 TVGVDNPERVHDAYPHQLSGGIGQRVMIAAMMIAEPGLLIADEPTSALDVMVRGQVLEMM 195
                +P  ++  YPH+ SGG  QR+ IA  +I EP  ++ DEPTSALD  V+  V+E++
Sbjct: 415 L----DPNSIN-RYPHEFSGGQRQRIAIARALILEPSFILLDEPTSALDRSVQLTVIELL 469

Query: 196 DREIRKRGMGLLMISHDLKMVAHFCDRVLVMYRGQVVESCAAKDLFRS-QHPYTRGLL 252
               ++R +G L ISHDL +V    DRVLVM +GQV+E  +A+ +F + QH YT+ L+
Sbjct: 470 KEIQKRRNIGYLFISHDLAVVKALSDRVLVMQKGQVMEQGSAESIFHNPQHEYTKKLI 527