Pairwise Alignments

Query, 282 a.a., Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) from Variovorax sp. SCN45

Subject, 530 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  197 bits (500), Expect = 5e-55
 Identities = 115/267 (43%), Positives = 164/267 (61%), Gaps = 7/267 (2%)

Query: 4   LLIEDLTVTYPTASGPVDVVKSLSLRMG-AERIGIVGESGSGKSMTARAILGLV-RSPGR 61
           L I++L+V +  A     V + +SL +   E + +VGESGSGKS+TA AIL L+ +    
Sbjct: 6   LKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSAH 65

Query: 62  ATASRMAYDGADLLRQTPSGWRAIRGRRIGMVLQDPKFSLNPVLRVGRQIAEAGLLHGVF 121
             +  + +   D LR +    R IRG RIGM+ Q+P  SLNP+ ++G+Q+ E   +H   
Sbjct: 66  YLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLAIHRGL 125

Query: 122 KPAQARDRVLEMLRTVGVDNPERVHDAYPHQLSGGIGQRVMIAAMMIAEPGLLIADEPTS 181
           +   A  + +E L  VG+ +PE   +AYPH+LSGG  QRVMIA  +I EP LLIADEPT+
Sbjct: 126 RATAAEQKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLIADEPTT 185

Query: 182 ALDVMVRGQVLEMMDREIRKRGMGLLMISHDLKMVAHFCDRVLVMYRGQVVESCAAKDLF 241
           ALDV V+ Q+L+++    ++ GM +L I+HDL +V    DRV VM  GQ+VE+ A   LF
Sbjct: 186 ALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETNACHTLF 245

Query: 242 RS-QHPYTRGLLNCMPTGQNPGQPLPT 267
            +  HPYT+ L+N  P     G P+PT
Sbjct: 246 AAPAHPYTQQLINADPR----GVPVPT 268



 Score =  124 bits (311), Expect = 4e-33
 Identities = 88/259 (33%), Positives = 136/259 (52%), Gaps = 19/259 (7%)

Query: 4   LLIEDLTVTYPTASGP-------VDVVKSLSLRMG-AERIGIVGESGSGKSMTARAILGL 55
           L  E L V +P   G        +  V  +S  +   + +G+VGESGSGKS T  AIL L
Sbjct: 276 LQAEKLRVWFPIKGGYFRRTQAYIKAVTDMSFTLAKGQSLGLVGESGSGKSTTGMAILKL 335

Query: 56  VRSPGRATASRMA-YDGADLLRQTPSGWRAIRGRRIGMVLQDPKFSLNPVLRVGRQIAEA 114
           + S G   A R A  D   L R+    +R+    ++ +V QDP  +LNP + V + I E 
Sbjct: 336 LASQG---AIRFAGQDLQALKRREMLPYRS----KMQVVFQDPYSALNPRMSVAQVIGEG 388

Query: 115 GLLHGVFKPAQARDRVLEMLRTVGVDNPERVHDAYPHQLSGGIGQRVMIAAMMIAEPGLL 174
             +H      +    +  +++ VG+D   R    YP++ SGG  QR+ IA  ++ +P  +
Sbjct: 389 LRVHSQLNDDEIDHAICAVMQEVGLDVDTR--HRYPNEFSGGQRQRIAIARALVLKPEFI 446

Query: 175 IADEPTSALDVMVRGQVLEMMDREIRKRGMGLLMISHDLKMVAHFCDRVLVMYRGQVVES 234
           + DEPTS+LD  V+ QVL+++    +K  +  L ISHDL ++   C   +VM  G++VE 
Sbjct: 447 LLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYLFISHDLAVIRALCHHTIVMKAGEIVEH 506

Query: 235 CAAKDLFRS-QHPYTRGLL 252
              + LF +  HPYT+ L+
Sbjct: 507 GETQSLFENPSHPYTQQLV 525