Pairwise Alignments

Query, 1052 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  617 bits (1592), Expect = e-180
 Identities = 348/1032 (33%), Positives = 569/1032 (55%), Gaps = 25/1032 (2%)

Query: 17   LSKWALDHAPLTRYLMVVLMVLGAFAYFQLGQDEDPPFTFRAMVVKTYWPGATAQQVAEQ 76
            ++ + +++  ++  + ++ ++ G  A+F LG+ EDP FT +  +V T +PGAT QQV E+
Sbjct: 22   VAAYFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEE 81

Query: 77   VTDKLERTLQEAPYADKIRSYSKPGESQIIFNIKDSSKSTEVANVWYTVRKKIGDMRATL 136
            VT  LE+ +Q+  Y D++ S S  G SQI   +K++    ++  +W  +R+K+ D++  L
Sbjct: 82   VTYPLEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGAL 141

Query: 137  PAGVQGPFFNDDFGDVYGVIYALESEGFSYAELKTLADDVRQQLLRVKDVAKVDQFGVQD 196
            P GV  P   DDFGDVYG++ A+  EG+SY EL    D +R++L  +  V+KV   G Q 
Sbjct: 142  PPGVNPPLVIDDFGDVYGILLAVTGEGYSYKELLDYVDYLRRELELIDGVSKVSVSGQQQ 201

Query: 197  EKVYIEISQKRLAQLGLDFNAVLQQLGSQNAVESAGSISSPQDVVQVRVAGQFTSVDQLR 256
            E+V+IEIS KR++ LG+    V   L +QN V  AG+I    + +++   G+F  V++L 
Sbjct: 202  EQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVEKLG 261

Query: 257  DMPI--RGSSGSQIKLGDIADIHRGYVDPPAVKVHHQGKEVIALGVSMAKGGDIIALGKA 314
            D+ +  RG+ G  I L D+A++ RGYV+ P+  +   GK  + +GVS A+G +++ +G+ 
Sbjct: 262  DLILSERGAQGL-IYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVGQR 320

Query: 315  LKATTATIDKRLPAGVKLAQVQDQPVSVASSVNEFVGVLIEAVAIVLAVSIISLGLHKGG 374
                 A +  + P G+ +A+V  QP  V  SV+ FV  L +AVAIV+ V +  +GL    
Sbjct: 321  FDRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGL---- 376

Query: 375  RFGWYIDMRPGLVVAITIPLVLAVTFLAMNYFGIGLHKISLGSLIIALGLLVDDAIIAVE 434
                    R GL++ + + L +  TF+ M YF I L +ISLG+L+IALG+LVD+AI+ VE
Sbjct: 377  --------RSGLLIGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVE 428

Query: 435  MMVRKMEEGYDKARAATYAYDVTAKPMLTGTLITAAGFLPIGLAKSVTGEYTFAIFAVTV 494
             ++   ++G  + +AAT     T  P+L  T+I    F PIGL++  TGEY   +F V +
Sbjct: 429  GILIGTQKGRTRLQAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLL 488

Query: 495  IALVLSWIVSVYFVPYLGTLLLKVKAHDPDAPPHEMFDSAFYNAFRRAVNWCVEHRWATI 554
            I+L+LSW  ++   P+   L  + +         + +    +  +RR + +C+   W T+
Sbjct: 489  ISLMLSWFTAISLTPFFADLFFRGQKAPASGEESDPYQGFIFVVYRRFLEFCMRRAWLTM 548

Query: 555  GATVLIFALGIVGMGKVQQQFFPDSSRPEILVDIWFPEGTSFAANEEVAKRVEKRFMEEA 614
            G  VL  A  + G  KV+Q FFP S+ P  +VD+W PEGT   A + +   +EK    + 
Sbjct: 549  GVLVLGLAASLYGFTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQE 608

Query: 615  GVSTVSTWIGSGVPRFYLPLDQVFPQTNVSQLIVLAKDLKVRETLRLKLPQLLAQEFPEV 674
             V +V+T  G G+ RF L            ++     D +    L  +    L   +P++
Sbjct: 609  SVDSVTTTAGKGLQRFMLTYSPEKSYAAYGEITTRVTDYQQLAALMARFRAHLDARYPQI 668

Query: 675  RGRVKLLPNGPPVAYPVQFRVIGPDPALLRGHADEVKAVLRDNPNMRGVNDNWNESVKVI 734
              ++K +  GP     ++ R++G DP +LR  A +V  V+  +P    +  +W E  KV+
Sbjct: 669  NYKLKQIELGPGGGAKIEARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRERTKVL 728

Query: 735  RLEVDQAKARALGVTSQAIAQASKTMFSGTTVGQYRENDLLIDIVLRQAPDERQAISDI- 793
              + ++++AR  G+T   + +     FSG T+G YR+   L+ IV R   +ER  I +I 
Sbjct: 729  EPQFNESQARRYGITKADVDEFLAMSFSGKTIGVYRDGTTLMPIVARLPEEERVDIRNIE 788

Query: 794  GNAYIPTSSGRSIPLTQIAKPV-FTWEPGVMWRENRDYAITVQG--DVIEGLQGATVTTQ 850
            G      +    IPL Q+       WE  ++ R+NR   +TV    D++     AT+  +
Sbjct: 789  GMKIWSPALSEYIPLQQVTLGYEMRWEDPLIVRKNRKRMLTVMADPDLLGEETAATLQQR 848

Query: 851  LLPKLRELEAGWAAAGQGGYRVEVAGAAEESSKGSASIVAGVPIMLFLVFTLLMLQLHSF 910
            L P++  +          GY +E  G  E S    AS+   +P+    +F + +   +S 
Sbjct: 849  LQPQIEAIPL------PPGYFLEWGGEYESSGDAKASLFKTMPLGYLFMFLITVFLFNSV 902

Query: 911  SRSLLVFITGPMGIAGVAGALLVLNRPFGFVALLGVIALMGMIQRNAVILIDQIEIDRAA 970
              SL+V++T P+ + GV   LL LN PFGF+ALLG ++L GM+ +N ++L+DQIEI+  +
Sbjct: 903  KESLIVWLTVPLAVIGVTTGLLALNTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMHS 962

Query: 971  GVPAWDAIVESAVRRLRPIVLTAAAAVLAMIPLSRSVFWGPMAVAIMGGLIVATVLTLLA 1030
            G   + A+V++++ R+RP+ + A   +L MIPL   +F+ PMAV IM GL  ATVLTL+ 
Sbjct: 963  GKDPYLAVVDASLSRVRPVCMAAVTTILGMIPLLPDIFFRPMAVTIMFGLGFATVLTLIV 1022

Query: 1031 LPAMYAAAFRVK 1042
            +P +Y     VK
Sbjct: 1023 VPVLYRLFHHVK 1034