Pairwise Alignments

Query, 1052 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1036 a.a., Cation/multidrug efflux protein from Sinorhizobium meliloti 1021

 Score =  742 bits (1916), Expect = 0.0
 Identities = 403/1034 (38%), Positives = 616/1034 (59%), Gaps = 29/1034 (2%)

Query: 15   FNLSKWALDHAPLTRYLMVVLMVLGAFAYFQLGQDEDPPFTFRAMVVKTYWPGATAQQVA 74
            FNLS  A+    +T + +V+L   G +A+  LG+ EDP FT + + V T WPGATA+++ 
Sbjct: 3    FNLSALAVRERAVTLFFIVLLAAAGVYAFMSLGRAEDPSFTIKTLTVTTVWPGATAREMQ 62

Query: 75   EQVTDKLERTLQEAPYADKIRSYSKPGESQIIFNIKDSSKSTEVANVWYTVRKKIGDMRA 134
            + V + LE+ +QE  + D++ + ++PG + +   +KDS+  T V   +Y  RKK+GD   
Sbjct: 63   DLVAEPLEKRIQELTWYDRVETTTRPGYAFLTVTLKDSTPPTAVEEEFYQARKKLGDEAR 122

Query: 135  TLPAGVQGPFFNDDFGDVYGVIYALESEGFSYAELKTLADDVRQQLLRVKDVAKVDQFGV 194
             LP+GV GPF ND++ DV   +YAL+++G    EL   A+ +RQ LL V  V K++  G 
Sbjct: 123  NLPSGVFGPFVNDEYSDVSFALYALKAKGMPMRELVRQAEVIRQDLLHVPGVKKINILGE 182

Query: 195  QDEKVYIEISQKRLAQLGLDFNAVLQQLGSQNAVESAGSISSPQDVVQVRVAGQFTSVDQ 254
            + E++++E S  +LA LG+    +   L  QN V  AGSI +    V +R  G + SV  
Sbjct: 183  RPEQIFVEFSYAKLATLGISAQDIAAALQRQNTVTPAGSIDTRGPQVFIRFDGAYNSVQA 242

Query: 255  LRDMPIRGSSGSQIKLGDIADIHRGYVDPPAVKVHHQGKEVIALGVSMAKGGDIIALGKA 314
            +   PI  ++G  +KL D A++ RGY DP    + H+G+  I LG  M +G + + LGKA
Sbjct: 243  IAATPI-VAAGRTLKLSDFAEVRRGYEDPATYIIRHEGEPAIMLGAVMQQGWNGLELGKA 301

Query: 315  LKATTATIDKRLPAGVKLAQVQDQPVSVASSVNEFVGVLIEAVAIVLAVSIISLGLHKGG 374
            L+  +A I + LP G+ LA+V DQ V++ ++V EF+     A+ +VL VS++SL      
Sbjct: 302  LEERSAAIARTLPLGMTLAKVSDQAVNIDAAVGEFMLKFAMALGVVLLVSLLSL------ 355

Query: 375  RFGWYIDMRPGLVVAITIPLVLAVTFLAMNYFGIGLHKISLGSLIIALGLLVDDAIIAVE 434
              GW    R G+VVA+ +PL LAV FL M   G    +I+LG+LI+ALGLLVDDAIIA+E
Sbjct: 356  --GW----RVGIVVALAVPLTLAVVFLIMLETGRFFDRITLGALILALGLLVDDAIIAIE 409

Query: 435  MMVRKMEEGYDKARAATYAYDVTAKPMLTGTLITAAGFLPIGLAKSVTGEYTFAIFAVTV 494
            +MV KMEEG D+ +AA YA+  TA PML+GTL+T  G +P+G A+S  GEY   IF V  
Sbjct: 410  VMVVKMEEGMDRIKAAAYAWSHTAAPMLSGTLVTIIGLMPVGFARSTAGEYAGNIFWVVG 469

Query: 495  IALVLSWIVSVYFVPYLGTLLLKVKAHDPDAPP-----HEMFDSAFYNAFRRAVNWCVEH 549
             AL++SW+V+V F PYLG  +L      PD  P     H ++D+  Y   R  + + V H
Sbjct: 470  FALIVSWVVAVIFTPYLGVKML------PDIKPVEGGHHAIYDTPNYRRLRGIIEFAVRH 523

Query: 550  RWATIGATVLIFALGIVGMGKVQQQFFPDSSRPEILVDIWFPEGTSFAANEEVAKRVEKR 609
            ++ T     ++ AL +VGMG V+ QFFP S RPE+LV++  PEG S        +++E+ 
Sbjct: 524  KYVTCAVVGIVMALSVVGMGGVKHQFFPTSDRPEVLVEVRMPEGASIETTIATVEKLERW 583

Query: 610  FMEEAGVSTVSTWIGSGVPRFYLPLDQVFPQTNVSQLIVLAKDLKVRETLRLKLPQLLAQ 669
              E+     ++++IG G PRF+  +    P    ++++VL  D   RE L+L+L   ++ 
Sbjct: 584  LQEQPEADILTSYIGQGAPRFFFAMAPELPDPAFAKIVVLTPDSHAREALKLRLRAAVSD 643

Query: 670  EF-PEVRGRVKLLPNGPPVAYPVQFRVIGPDPALLRGHADEVKAVLRDNPNMRGVNDNWN 728
               PE   RV  L  GP   +PV+FR++GPDPA L   +++   +++  P++R  N +W 
Sbjct: 644  GLVPEGYVRVTQLVFGPYTPFPVEFRIMGPDPAQLYQISEKALEIMKGVPDVRQANRDWG 703

Query: 729  ESVKVIRLEVDQAKARALGVTSQAIAQASKTMFSGTTVGQYRENDLLIDIVLRQAPDERQ 788
                V+R   DQ +   +G++    AQ  + + SG  V Q REN   + +V R A + R 
Sbjct: 704  NRTPVLRFVPDQDRLNLIGLSPAEAAQQMQLLLSGIPVTQVRENIRNVPVVARSAGESRL 763

Query: 789  AISDIGNAYIPTSSGRSIPLTQIAKPVFTWEPGVMWRENRDYAITVQGDVIEGLQGATVT 848
              + + +  + +  GR +PL QI      +E  ++ R +R   IT++ D+ E  Q   V+
Sbjct: 764  DPARLADFSLMSRDGRQVPLDQIGHSEIRFEEPILKRRDRTPVITIRSDINEATQPPEVS 823

Query: 849  TQLLPKLRELEAGWAAAGQGGYRVEVAGAAEESSKGSASIVAGVPIMLFLVFTLLMLQLH 908
             Q++  L+ L A        GYR+E+ G  EES K + ++V   P M+  +  +++LQ+ 
Sbjct: 824  QQIMTALQPLIASLPV----GYRIEMGGNIEESLKANVALVKIFPAMIAAMLIVIILQVR 879

Query: 909  SFSRSLLVFITGPMGIAGVAGALLVLNRPFGFVALLGVIALMGMIQRNAVILIDQIEIDR 968
            S S   +V +T P+G+AGV   LL+ N+PFGF A+LG+I L G++ RN +IL +QI+ ++
Sbjct: 880  SLSTMTMVMLTAPLGLAGVVPVLLLFNQPFGFNAILGLIGLAGILMRNTLILTEQIKENK 939

Query: 969  AAGVPAWDAIVESAVRRLRPIVLTAAAAVLAMIPLSRSVFWGPMAVAIMGGLIVATVLTL 1028
            AAG+  + A++E+ V+R RP++LTA AAVLA +PL+ SVFWG MA  ++GG  V TV+ L
Sbjct: 940  AAGLHDYHAVIEATVQRTRPVILTALAAVLAFVPLTHSVFWGSMAYTLIGGTAVGTVMIL 999

Query: 1029 LALPAMYAAAFRVK 1042
            L LPA+YAA FR+K
Sbjct: 1000 LFLPALYAAWFRIK 1013