Pairwise Alignments

Query, 399 a.a., Integrase from Variovorax sp. SCN45

Subject, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score = 58.5 bits (140), Expect = 3e-13
 Identities = 91/409 (22%), Positives = 165/409 (40%), Gaps = 54/409 (13%)

Query: 6   LTKSAVDAAQPQAQAVELRDTLVPGFLCKVTPAGRKVFMLQYRTNAGERRKP-ALGLYGE 64
           LT + V  A+   +   L D    G   +V   G K+++L+Y     ++R   + G + +
Sbjct: 8   LTNTQVKQAKESDKEYTLSDG--DGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPD 65

Query: 65  LTVEQARSLAQEWLAEVRRGGDPSAAK--AAARSAPTVKELCTKFMEDY---SKQRNKPS 119
           +++ +AR    E    +    DP   K     +    ++    K+ + +    ++  KP 
Sbjct: 66  VSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRESVKPE 125

Query: 120 TQRGYQAVIDRCIVPMLGRLKVQDVKRPDVATAMK--KMAHKPAEANRAFSVMRKMFNLA 177
           T       +++ I+P LG + +QD+K   V + ++  K         R   ++ ++  LA
Sbjct: 126 TADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLA 185

Query: 178 EVWG-----HRPDGTNPCRHVPMYPNGKATHLISDEDMGKLFRRLEHIEAEGLENYVIPL 232
              G     +  D T       ++P  K  H+++ E       RL  +  + + N  I L
Sbjct: 186 VASGDIEVNYLADITK------LFPAPKRQHMVTIEP-----ERLPEL-MQAIANANITL 233

Query: 233 AIRLQFEF----AGRRSEIVTLRWDWVDLDNRRVVWPDSK---TGGMSKPMSEEAYRLLS 285
           A R   E+      R  E  T RW  +D  N+  V P  +       + P++E+   LL 
Sbjct: 234 ATRCLLEWQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLE 293

Query: 286 -TAPRQEGTPYVLPSPSHPGKHLTTGEYYGGWSRALKAAG-ATHVGTHGIRHRSATDIAN 343
              P      Y+ PS  +P  H+ +       + ALK  G    + +HG+R  ++T +  
Sbjct: 294 IMKPISSHREYIFPSNKNPKSHVNSQSA----NMALKRMGYKGQLVSHGLRALASTTLNE 349

Query: 344 SGIPVKVGMALTAHKTVAMFMRYVHTEDDPVRKA---AELVANRRKTIT 389
            G    +  A  A           H + + VRKA   AE +  RRK ++
Sbjct: 350 QGFNPDIIEAALA-----------HVDKNEVRKAYNRAEYLEQRRKLMS 387