Pairwise Alignments

Query, 399 a.a., Integrase from Variovorax sp. SCN45

Subject, 309 a.a., site-specific recombinase, phage integrase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 55.5 bits (132), Expect = 2e-12
 Identities = 71/310 (22%), Positives = 125/310 (40%), Gaps = 23/310 (7%)

Query: 78  LAEVRRGGDPSAAKAAARSAPTVKELCTKFMEDYSKQRNKPSTQRGYQAVIDRCIVPMLG 137
           LA   R      +K   R+  TV +  T +  D+   ++   T R       + I P++G
Sbjct: 5   LASALRADAVRLSKQVVRANMTVGDAWTLYCRDWLASKSSYKTDRSLYL---KHIEPVIG 61

Query: 138 RLKVQDVKRPDVATAMKKMAH-KPAEANRAFSVMRKMFNLAEVWG--HRPDGTNPCRHVP 194
             ++ +VK  D+   +++M    P     A  ++++++     WG  H P  T+    V 
Sbjct: 62  SRRMDEVKTVDINELLRRMGDLSPQTRVHAVGLVKRLYRRMAGWGVYHGPTPTDGV--VV 119

Query: 195 MYPNGKATHLISDEDMGKLFRRLEHIEAEGLENYVIPLAIRLQFEFAGRR-SEIVTLRWD 253
              +      +S ++   L   L+    +  +   + L       FAG R  EI +L+  
Sbjct: 120 KRVDNARMRFLSPKEARWLLEELDCRSPQFADVCRVSL-------FAGLRLREIFSLKVQ 172

Query: 254 WVDLDNRRVVWPDSKTGGMSKPMSEEAYRLLST-APRQEGTPYVLPSPSHPGKHLTTGEY 312
            V++D R +   D+K+G     M+E+  R+L+     +    +V    S  G   T  + 
Sbjct: 173 HVNIDARVIAVMDAKSGSRMASMTEDLARVLARYVVGRRPEEFVFTKASGEGMR-TINQT 231

Query: 313 YGGWSRALK----AAGATH-VGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYV 367
           +    R L+       A H V  H +RH  A+ +   G+P+     L  H  V M  RY 
Sbjct: 232 FVRVVRDLELNDGVDDARHKVVFHTLRHTFASWLVQRGVPLYTVADLMGHSVVEMTRRYA 291

Query: 368 HTEDDPVRKA 377
               D  R+A
Sbjct: 292 KLAPDTRREA 301