Pairwise Alignments

Query, 342 a.a., Transcriptional regulator, AraC family from Variovorax sp. SCN45

Subject, 355 a.a., AraC-type DNA-binding domain-containing proteins from Pseudomonas stutzeri RCH2

 Score =  144 bits (364), Expect = 3e-39
 Identities = 100/308 (32%), Positives = 150/308 (48%), Gaps = 11/308 (3%)

Query: 34  VLGRAGISESLLELKDSRVTVEQFNALFIAVKDSLNDECLGYLHERPMRPGSFALMVRSA 93
           +L + G+  + L+  D R+ V  ++ L++ +    +DE  G +  R +R GSF  + RS 
Sbjct: 45  LLEKIGLDPACLQDPDGRMDVRDYSQLWLRLARHFDDEFFG-MDPRRLRSGSFVFLSRSC 103

Query: 94  FTAHSLSCALRRLSESFALLQDDVTLVPVTEGALGGFALEMRGGPGAHAEFLHAHLLRVF 153
               +L  AL    E   L  +++    +   +L    L  R     +AE   A     F
Sbjct: 104 LQQPTLEKALVHALEFLGLGLENLRGKLIRSQSLAEVVLRER-----NAEPARAFCYFTF 158

Query: 154 WRLL----LWLHGGRLVPQRFDFNFALPLHAMSYGRIFSGTLCFGQPRTAAWFDADAFKQ 209
           W LL     WL G R+     +   A P +   Y  +FS  L FG+P T   F A+    
Sbjct: 159 WMLLHGLACWLVGRRIPLLAVELRCAEPDYTDDYRVMFSDNLRFGRPSTRIIFAAEVLDL 218

Query: 210 PVRRDRDALQSFLRATPGNVVGPYLNERSASARVRMVLQRASPE-WPDLVVTAQRLHLSV 268
           P+RR    L++FL   P N++  Y +  S ++R++  L+    E WPD    AQ L +S 
Sbjct: 219 PIRRSEAELRAFLAEAPANILVRYRDHSSLASRIKQHLRSLPAERWPDSETLAQTLCISA 278

Query: 269 SALQRHLASEGTSFQALKDQLRRDMAIVRLTSSEASLVAIAADLGFTDSTAFQRAFKVWT 328
           S L+R LA  G  +QA+KD LR++MA   L  +  S   IA  LGF D ++F +AF+ WT
Sbjct: 279 STLRRRLAEAGQPYQAIKDGLRQEMATEWLADAAISYGEIAERLGFADVSSFYKAFRKWT 338

Query: 329 GSAPGAYR 336
           G  PG YR
Sbjct: 339 GINPGHYR 346