Pairwise Alignments

Query, 342 a.a., Transcriptional regulator, AraC family from Variovorax sp. SCN45

Subject, 349 a.a., AraC-type DNA-binding domain-containing proteins from Pseudomonas stutzeri RCH2

 Score = 97.4 bits (241), Expect = 5e-25
 Identities = 87/312 (27%), Positives = 128/312 (41%), Gaps = 6/312 (1%)

Query: 34  VLGRAGISESLLELKDSRVTVEQFNALFIAVKDSLNDECLGYLHERPMRPGSFALMVRSA 93
           + G  G+  S L   D+R   +    L+        +  +G    R +RP +  ++  + 
Sbjct: 40  LFGELGLDYSALNDPDARFAQDDMTRLWQRAVAVSGNPAIGLDMARQVRPAALNVVGYAL 99

Query: 94  FTAHSLSCALRRLSESFALLQD--DVTLVPVTEGALGGFALEMRGGPGAHAEFLHAHLLR 151
            ++ +L     RL     ++ +  D+   P  EG     +L + G     A       L 
Sbjct: 100 MSSCNLKEGFARLVRYQRIIAEGADLDFQPCAEGYR--LSLTILGDRLPPARQSAEGSLA 157

Query: 152 VFWRLLLWLHGGRLVPQRFDFNFALPLHAMSYGRIFSGTLCFGQPRTAAWFDADAFKQPV 211
                  WL G  L P    F    P     Y ++F   L F   R A  F     + P+
Sbjct: 158 GCLTFCRWLSGTMLRPLEVSFQGPPPDDLEPYRQLFQAPLRFEAQRYALLFRQADVEMPL 217

Query: 212 RRDRDALQSFLRATPGNVVGPYLNERSASARVRMVLQRASPEW-PDLVVTAQRLHLSVSA 270
               +AL        G  +  + + R    R R +L R  P+  P   + AQ L LS   
Sbjct: 218 PTANEALAQLHDRFAGEYLSRFADTRVLH-RTRQILCRLLPQGEPRREIVAQALCLSERT 276

Query: 271 LQRHLASEGTSFQALKDQLRRDMAIVRLTSSEASLVAIAADLGFTDSTAFQRAFKVWTGS 330
           LQR L  EG++FQ L D  RRD+A+  L   + + + IA  LGF D + F RAFK W G 
Sbjct: 277 LQRRLQEEGSTFQQLLDDTRRDLAVQHLAQPDLAPLEIAYLLGFADPSNFYRAFKRWFGM 336

Query: 331 APGAYRARSRSR 342
            PG YR  +RSR
Sbjct: 337 TPGEYRLAARSR 348