Pairwise Alignments

Query, 593 a.a., 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC) from Variovorax sp. SCN45

Subject, 596 a.a., acyl-CoA dehydrogenase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  450 bits (1157), Expect = e-131
 Identities = 261/581 (44%), Positives = 348/581 (59%), Gaps = 14/581 (2%)

Query: 3   VYIAPLREMLFAMKEVGGLDAICAQPDHEETTPDLVEAILQEAANYAAGVLDPLNRPGDV 62
           +Y APLR+  F + E+  +         +E   +L +AILQ  A++   ++ PLN  GD 
Sbjct: 3   IYQAPLRDYQFILSELLNIYGRDDLQGFDEIDAELTDAILQGVADFTTEIMLPLNSQGDT 62

Query: 63  QGARWHDGRVTPADGFREAWASFCENGWNGMPAATEWGGQGLPTLVSTAVLEMWKSSNLA 122
           QG +  DG+V   +GF++A+  + +NGW  + +  E+GGQGLP  +     EM  ++N+A
Sbjct: 63  QGCQLVDGQVRTPEGFKDAYQQYVDNGWATLTSDPEYGGQGLPECIGVFATEMKTATNMA 122

Query: 123 FSLCQMLTLGAVEAIAHHGSDALQRRFLAPMVEGRWTGTMNLTEPQAGSDLAALRSRAVH 182
           F++   LT GA  AI  HGSDAL+ ++L  +V G WTGTMNLTE  AG+DLA LR++A  
Sbjct: 123 FAMYPGLTHGAYAAIHAHGSDALKAKYLEKLVSGEWTGTMNLTEAHAGTDLALLRTKAKP 182

Query: 183 EG-DHYHVSGNKIFITWGEHDMAENIVHLVLARLPDAPPGVKGISLFLCPKYLVNDDGTL 241
            G D Y +SG KIFI+ G+HD+A+NIVHLVLARLPDAP GVKGISLF  PKYLVNDDGTL
Sbjct: 183 VGEDTYAISGEKIFISSGDHDLADNIVHLVLARLPDAPDGVKGISLFAVPKYLVNDDGTL 242

Query: 242 GERNDLACTSIEHKMGIHGSPTASMSFGDSGGAIGYLVGEPHQGLACMFTMMNHARLNVG 301
           G RN +  +++EHKMGIHG+ T  M F    GAIG LVGEPHQGL  MFTMMN ARL VG
Sbjct: 243 GCRNGVEASALEHKMGIHGNSTCVMVF---DGAIGELVGEPHQGLRAMFTMMNEARLGVG 299

Query: 302 LEGVGISERAYQRARAYALERVQGKPLI------SGSTAIAGHPDVRRMLMDMKARTEAM 355
           ++G+G+SE AYQ A +YA ER+QG+ L       S +  I  H DVRRMLM  KA  +  
Sbjct: 300 VQGLGVSEIAYQNALSYARERLQGRALSGVKESESPADPILVHGDVRRMLMAQKAFNQGA 359

Query: 356 RALAYFCAGQMDRAAGHADAQERAQAQALVGLLIPVVKGWCTDSAQGITSDGVQVHGGMG 415
           RAL    A  +D +  H D  +   A  L  L  PVVKG+ TD       D  QV+GG G
Sbjct: 360 RALMGQQALWLDESHRHQDKAKATIAAKLAALFTPVVKGFVTDQGFKACVDAQQVYGGHG 419

Query: 416 YVEETGASQHMRDARITTIYEGTTGIQANDLIGRKLAREGGRTLKALLGRIDGDARRLVE 475
           Y+ E G  Q +RD+RI  IYEGT G+QA DL+GRKL  + G  L      +     + +E
Sbjct: 420 YIHEWGMEQFVRDSRIAMIYEGTNGVQALDLVGRKLLADKGEALGLWSEMVKPFVAKYLE 479

Query: 476 SPDAVLAQIGRALAAAAQALDEAVDWLLAHD-GQPAQCAAGAVPFLRLAGTVIGGWLSAR 534
             D  L      L  A   L++A  +++A+    P    A ++ +L++ G V  GW+ AR
Sbjct: 480 --DEALKPYLMPLMEATTDLEKATQYIVANGVKNPDIIGAASMGYLQILGIVALGWMWAR 537

Query: 535 MAEAATAQLAAGAGDAGFLGTKRATASHYAAHVLVQAPMLR 575
           MA  +   + AG  +A F   K  TA  Y ++   Q   +R
Sbjct: 538 MAVKSQQAMTAGEEEA-FYANKLVTAKFYMSYWAPQTRSIR 577